G888904


Basic Information

Item Value
gene id G888904
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41070101 ~ 41070332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1011277
ggcagactaaataacttttttgcccgctttgagggcaatacagtgccactgacacggcccgcaactaaaacatgcgtactctccttcactgcagccgacgtgaggaaaacatttaaacgtgtcaaccctcgcaaggctgcaggcccagaccgcatccccagccgcgccctcagagcatgcgcagactagctggctggtgtgtttacgaacatattcaatcaatccctatccc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1011277 True 232 lncRNA 0.53 1 41070101 41070332

Neighbor

gene id symbol gene type direction distance location
LOC110533887 LOC106603266 coding upstream 132786 40920569 ~ 40937315 (+)
LOC110533886 LOC106568122 coding upstream 152599 40910127 ~ 40917502 (+)
LOC110533885 LOC106603267 coding upstream 160111 40881110 ~ 40909990 (+)
LOC110533884 LOC105010779 coding upstream 191002 40861351 ~ 40879099 (+)
aatf LOC106603273 coding upstream 574161 40479739 ~ 40495940 (+)
LOC118966775 NA coding downstream 331158 41401490 ~ 41404142 (+)
LOC110533893 LOC106603261 coding downstream 883875 41954207 ~ 41966800 (+)
LOC110533894 LOC106603260 coding downstream 908953 41979285 ~ 41985398 (+)
LOC110533895 LOC106603254 coding downstream 923409 41993741 ~ 42004790 (+)
LOC110533897 LOC106603248 coding downstream 1000631 42070963 ~ 42077962 (+)
G888897 NA non-coding upstream 9873 41059991 ~ 41060228 (+)
G888821 NA non-coding upstream 127677 40942155 ~ 40942424 (+)
G888789 NA non-coding upstream 237614 40832221 ~ 40832487 (+)
G888779 NA non-coding upstream 259610 40810096 ~ 40810491 (+)
G888915 NA non-coding downstream 16544 41086876 ~ 41087249 (+)
G889805 NA non-coding downstream 563900 41634232 ~ 41634439 (+)
G889825 NA non-coding downstream 580836 41651168 ~ 41651372 (+)
G889853 NA non-coding downstream 601346 41671678 ~ 41672001 (+)
G889867 NA non-coding downstream 610211 41680543 ~ 41680866 (+)
LOC110533845 LOC106603305 other upstream 2257962 38755443 ~ 38815017 (+)
G883966 NA other upstream 4218948 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 4268516 36799376 ~ 36801589 (+)
G883473 om-i other upstream 4774554 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 5383528 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 641995 41712327 ~ 41717292 (+)
G890228 NA other downstream 1007883 42078215 ~ 42154093 (+)
G891133 NA other downstream 1912350 42982682 ~ 43109676 (+)
G891188 NA other downstream 2026388 43096720 ~ 43097617 (+)
G891741 NA other downstream 2463984 43534316 ~ 43600230 (+)

Expression


Co-expression Network