G889870


Basic Information

Item Value
gene id G889870
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41681001 ~ 41682352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1012297
ctttgtaggcactcctatatgttccataaacatcacaattgggtctttttcccgattaaatccgtccatgtatgcccaaaatatccatttgtatagcctgtctggttcaggaaaaaagctttcttccaacacgcaacgtcatttttaaaaattatataagttgcctatattctttgacaaaacacttcaacctacttttgtaacccaactttaggtatttgtaaacgttaataagcgatcaaattgatcactgggcgatctgtattcaatagcagcttctcaagaaaacaatgtccctttttctctcctccaaaatcgattgctgtatgctggacggaatgaaggatctatttgtcatgacacaaaggatttttgtcaatgaaaatgacgtttttggcaacatcatgtggaagctgtaggaattgcaacctcagccctatttaatttggtgtcccttaaacaatacatgcaagtggcgcatggatatttttttcagttttcagtgaccagtttttcttgtgcttttcgatgaaacacacgctctgttatagtcacagccgtgatttacccagttttagaaacttcagagtgttttctatccacacatactaatcatatgcatatactatattcctggcatgaggagcaggacgctgaaatgttgcacgatttttaacagaatgttcgaaaaaggagggttagacttaagaggttttaacaccCAATCAATTTCATTTCCATGTCTGTGCTTGCAGTGTTAAACCTGTTACATCTACCCCccccttttttgaaaattctgttaaaaatcgcgcaacttttcagcgtcctgctactcatgccaggaatatagtatatgcatatgattagtatgtgtggatagaaaacactctgaagtttataaaactggttaaatcacggctgtgactataacagagcgtgtgttgcattgaaaaacgcaagaaaaactgctctctgaaagcaaaaaataatttccataagtcacttccaccagttgttaaaagagaacagaatttaatggaaatttgcctgcacttcatacaaattccgcacgatggcgccattgtactaattttcaatcgaattaattgttggaaaatccatctgtctgaccccaagttttccagtcttcacccggatgcagttcagggagagatcagattgcattgtttttgaagtgaggacctattgaagagacatcgccctgtaatcgttttgatagattataaacgtttactaatacctaaagttggattacaaaaggatttcgaagtgttttgtgaaagtttatcgtcgacttttttaattttaaaaaattacgcagcgtttaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1012297 True 1352 lncRNA 0.37 1 41681001 41682352

Neighbor

gene id symbol gene type direction distance location
LOC110533111 LOC106603235 coding downstream 205022 41474987 ~ 41475979 (-)
LOC110533890 LOC106603263 coding downstream 239251 41256824 ~ 41441750 (-)
LOC110533882 LOC106603268 coding downstream 827521 40840102 ~ 40853480 (-)
LOC110533881 LOC106603270 coding downstream 1041340 40631165 ~ 40639661 (-)
LOC110533878 LOC106603271 coding downstream 1133608 40496714 ~ 40547393 (-)
LOC110533892 LOC106603262 coding upstream 29959 41712311 ~ 41806880 (-)
LOC110533896 LOC106603257 coding upstream 322474 42004826 ~ 42011726 (-)
LOC110534921 NA coding upstream 663364 42345716 ~ 42353693 (-)
LOC118966777 LOC106603212 coding upstream 862259 42544611 ~ 42553273 (-)
LOC110533933 NA coding upstream 892421 42574773 ~ 42583308 (-)
G889869 NA non-coding downstream 228 41680544 ~ 41680773 (-)
G889842 NA non-coding downstream 19560 41661241 ~ 41661441 (-)
G889840 NA non-coding downstream 22070 41658611 ~ 41658931 (-)
G889803 NA non-coding downstream 48414 41632378 ~ 41632587 (-)
G889395 NA non-coding downstream 594565 41086084 ~ 41086436 (-)
G889874 NA non-coding upstream 3078 41685430 ~ 41686151 (-)
G889877 NA non-coding upstream 8875 41691227 ~ 41691445 (-)
G890337 NA non-coding upstream 217199 41899551 ~ 41900146 (-)
G890356 NA non-coding upstream 242585 41924937 ~ 41925248 (-)
ksr1a LOC106603285 other downstream 1787298 39843126 ~ 39893728 (-)
G887329 NA other downstream 2463263 39217313 ~ 39217738 (-)
rpl36a LOC106568029 other downstream 2495507 39183698 ~ 39185578 (-)
G885767 NA other downstream 3440442 38238950 ~ 38240559 (-)
G890360 LOC106603260 other upstream 300349 41982701 ~ 41984417 (-)
G890385 LOC100136012 other upstream 305359 41987711 ~ 41989801 (-)
G890403 NA other upstream 394389 42076741 ~ 42077947 (-)
LOC110533946 mpp1 other upstream 1376658 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 1511330 43183815 ~ 43248006 (-)

Expression


Co-expression Network