G889874


Basic Information

Item Value
gene id G889874
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41685430 ~ 41686151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1012301
atacagtaataacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtaaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcaagatacagtagatggtatcgggtacagtatgtacaaatgagatgagtatgtaaacaaagtggcatagtatagtataaagtggctagtgatacatgtattacataaggataccgtcgatgatatagagtacagtatatacgtatgcatatgagattaataatgtagggtaagtaacatttatataaggtagcattgtttaaagtggctagtgatatatttacatcatttcccatcaattcccattattaaagtggctggagttgagtcagtgtcagtgtgttggcagcagccactcagtgttagtggtggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctctcggtcccagctttgatgcacctgtactgacctcgccttctggatgatagcggggtgaacaggcagtggctcgggtggttgatgtccttgatgatctttatggccgtcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcccccggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgagggcggtgcagttgccataccaggcggtgatac

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1012301 True 722 lncRNA 0.43 1 41685430 41686151

Neighbor

gene id symbol gene type direction distance location
LOC110533111 LOC106603235 coding downstream 209451 41474987 ~ 41475979 (-)
LOC110533890 LOC106603263 coding downstream 243680 41256824 ~ 41441750 (-)
LOC110533882 LOC106603268 coding downstream 831950 40840102 ~ 40853480 (-)
LOC110533881 LOC106603270 coding downstream 1045769 40631165 ~ 40639661 (-)
LOC110533878 LOC106603271 coding downstream 1138037 40496714 ~ 40547393 (-)
LOC110533892 LOC106603262 coding upstream 26160 41712311 ~ 41806880 (-)
LOC110533896 LOC106603257 coding upstream 318675 42004826 ~ 42011726 (-)
LOC110534921 NA coding upstream 659565 42345716 ~ 42353693 (-)
LOC118966777 LOC106603212 coding upstream 858460 42544611 ~ 42553273 (-)
LOC110533933 NA coding upstream 888622 42574773 ~ 42583308 (-)
G889870 NA non-coding downstream 3078 41681001 ~ 41682352 (-)
G889869 NA non-coding downstream 4657 41680544 ~ 41680773 (-)
G889842 NA non-coding downstream 23989 41661241 ~ 41661441 (-)
G889840 NA non-coding downstream 26499 41658611 ~ 41658931 (-)
G889803 NA non-coding downstream 52843 41632378 ~ 41632587 (-)
G889877 NA non-coding upstream 5076 41691227 ~ 41691445 (-)
G890337 NA non-coding upstream 213400 41899551 ~ 41900146 (-)
G890356 NA non-coding upstream 238786 41924937 ~ 41925248 (-)
G890367 NA non-coding upstream 259424 41945575 ~ 41945791 (-)
ksr1a LOC106603285 other downstream 1791727 39843126 ~ 39893728 (-)
G887329 NA other downstream 2467692 39217313 ~ 39217738 (-)
rpl36a LOC106568029 other downstream 2499936 39183698 ~ 39185578 (-)
G885767 NA other downstream 3444871 38238950 ~ 38240559 (-)
G890360 LOC106603260 other upstream 296550 41982701 ~ 41984417 (-)
G890385 LOC100136012 other upstream 301560 41987711 ~ 41989801 (-)
G890403 NA other upstream 390590 42076741 ~ 42077947 (-)
LOC110533946 mpp1 other upstream 1372859 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 1507531 43183815 ~ 43248006 (-)

Expression


Co-expression Network