G890374 (LOC106603261)


Basic Information

Item Value
gene id G890374
gene name LOC106603261
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41962712 ~ 41966849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1012939
GAGGAGTGTGCTGCAATAGCATCAATAACACAGGCAGGCCtactcaataataataataattttatttaaaaatgtctaaatatttcaatacaaacatttttttttacaaatgtaaaatACTCTTGTCTACACACATTCATCAGCATTCCGCCAAGGTTATCCTACTACTTTACAGGCAGAATGATTtaatgtgtaatatatatataGAGGAACACAACTACAGCGAGCCTACACTACATCTCAAAGTGGAGTGCAATCCCAGAATTTAACAACACACTATGAATCTAAGTTTGAAGGTTTTATACAAAGTTCTTATACAGAGAACACCCCTCAATTCCCATCAGGGTTTCTTGGCATTCTTGCTAAGCTTGTCACCAAGCTGTTGGATCAAGTCAGCTAGTTCCTCTGTGGCCTGAGACTTCTCCTCCAGGAGCTCATATCGCAGGCTGGAGATGTCCTGCTTGATCTCCTTCAGCTCACCTGCAAGGCATGCACCACAGGTTATTGATCGCTCAATCCACTACAACTCCATGTCACAGCCTTGCAGCTGTAAGAATGATGAGTATTCCACAACAGCTTTGAGATCTTACATAAATGGATAGGAATCATTCTCACCTTCGTTGATTTCGTCATTTTCACTGTCAACCTGAGCCTTTAGCACATATCTCTTAATGAGCCTCTTCATCAGTTTCTTTCAAGAAAATAGGGAGAATCGGAACTTCAGAACAGTTCAGAATGTAGCATGTCTGAATATCGTCTGATCTTGCTAATTAATCAAATTGACCTGTATGAAGGAAGTACCTGGTATCGAGTAGGATGTTTGATGGGTTTTCTAATGGTGAAGTCATCCTGCCCTGGTGTCCTGGTTTGAGGTCTGTACTGATTAAGCTGAAATGGAACAGAAACCACATACCCATTAAAATTTCATTAATTAAAGAGGAAGATATATAACTGGCTACAGCCTCTCCCTAAAAGCCAACTTCTGACCTTAAATCGCAAATTGATCATGGCTGTCTCACGCTGGTTGTCATGGTGATGAGCTTTGGCCTTGCACAGCCTCACCAGACAAGCCCTTGTGCGCAGAGCTAGGTAGTAGAAAGACTTGGGGCTGGGAACCAGGTTAAATGGTGGGGGCAAAGTACGCCCCTCGTCAAAGTAGGATAGCCAGAGTTTAGCACGGGCAAACTTCCACTCCACATCAGCATCCTCCTGTTGAGATTGAGACAAGCCATGATATAAATGGAGGGTAGTAATAGGTGAGGGGCAATGACTCAGTTTGGAGCACAATCATACAATTAATCTAATATGGTCTGATTATTTTATCATAACTGCTCACAACAGTGTACTCACAAAATGGTACATGAATACAACATGAACATAACAGTATAACAACTCACCCATACTGTAAATTGACATAATTCCACTCTGACCTCAAATCATTGATTATTGACAATATATCTCCTGTGAATTCCCTAGTGGTGTTTAGGCCTATTGGTTCCTAGTCTCACCTCAATCTCTTGATAGGAGTGATTGATCATTGCAATCAGCATGTTGAGCAGTACGATTACCATGGTTACATTGTAGACGCCAAAGAGAACATAACCAATGTTCTCTATGAACTTATGGTCATACTTCAAGACCACAGAGATAACCTCGGACAAGCCGAAGATGGACCAAAATAGAGTCTTAAAGCTCTCCTCCACCCTGTGAACACACATaatcaaacaaaacacacacgcgtgcaaacgcacacacacggacattaataaataacacacaaatgaatacatagacatacatacatacatctcgCCTTAAAGCACTTAATTTACAGGAACAGGCAGGAGGGCACTTACGTGGTGAAGGCGGGGTTGTACTTGGCACCAAGGTAATAGGAATATAGATTGAACATGCCAATCATGAAAGCTAGGAAGACCATTATGAAGATGACCATGAACTTGAAGATGTCCTTGACCGTCCGGCCGAGGGAGATTTGAAGTGGGCCGAAGCTCTCATTGGCAGGCAAGATGTAGGCAATGCGGGAGAAACTGAGCACCACCGCAATGGAGTACAAACCCTCGGAGATCAGCTGAGGGTCGGAGGGTAACCACCTGTtcctggctgagagagagaggttgctgTTAAATGTCACTTTGTGACCTGGGGACTGACTCAGGTTCTAtgacattttgataaaaaatgtGCTATTCACATGGAATTGCTCATTAGGTGGTACTTCACATGGGAGACTCTAGAAACATCTGTGCAAACACCTTTTTATCTTGGCGCTATAAAAGGTTCTACCTGCAGTCTGATCACACAACACTGCGTATGTCAATCAGAAATATTTGTATGCAAGGTGATATATTTATTTAGGCATGAAAGAGGAAGACATCACAAAACAGTTCTGAGATCTGGGACTTGAAAAATACTCATTTCAAAACTCCATATTTTGCAGATAGAACCTCATAGTACCAAGTCCTTGATTTTTCATATCATAGGTTGCAGTCCTTTTTTTACATGACTTTTTTTAATCACCGCTTTTTCAAAAGAATGGCCAGAGATGAAGCATTGTTATTATCATTCTCTAAGTGTCACTGACCATGGGTGTAGTATGCTACATTTGGTGGCAGTGAGGCGTTGCTCAGGTCTATGTTGGGCATGTTGGGCACATACATGTCCACATACAGCTGGGCCTCAGAGGCCCTCAGGAAGGCCATGAGCCGAGCTGTGAAGGATGCCACGAAGATGGACAGCATGCCAAAGTCTAGcacgttccacaggtgcatgatgTACTCCCTAGGCCCATCAGCCCAGATCTCCTTACACTCCGACCAGATCATCCCTAATGAAGAGAGTGCTTTTCAGTAGGTGCAAAAGCTCTCTGTTTTGAGCATACGAGTGGTATGATTTGAATACTTTAAGATTTTATTCATGGTGAAGAGACAGGTACAAAGACATATGAATAGACTAGATAATAAAGTCTCTCCCACAAAAGCAGCTGTTTGAAAACCAGAATAAATTACCAAGCACCCAATTCATGATGAGCATCTCAGTCCAGGAGAACTGACTGGTTTTGACCCTGAACACCTGATGAGGGTGGTCTGTTATTGTCTCATTGGGAAGGTTCTTGACCCCTTCGAAGCGGTCCGAGGCATTGATTACCAGTAGTCCAAGGAAGATCGTGAATGACACAGCATGGGCCACAAACTTCATGAAGGGACTGCGGAGAATCTGACCCAACTGATATAGAGGAAATCAACCGCATAAATGGCAACCATCAACCTCATGATATAAACATATCACTATTtttaataacacaatagataatGAGTGATtctaataacacaatagaaagggGATTGTGTGTACCTTACTACAGGGCATGACCCAGTATGCGATGGCGAGGAAAGGAAGGCCGATCGCCACTCCCAGGACTGTCCAGCATTTGACCCCAACAGACTGCTGCCTAAGTCCAGCTAGGTTCTCATACCACAGGGTCAGAAGCTGCTGCTGGCAGTTAGGATGGGCCACAAACTTTTTTGACCTCGTACTTAATGGCCAGTTTGACCCGGATGAGGCAGGGTCGACTGTGATCACTGGGCAGAGCTTGGTCCACATCCCCATTCAAAATGGCCTCCACCTCCTCCGTGTCTCTGCATAAGTCAAGCACTCCCACCACAAAGTCTTTACACTGCATGGACAGCTTCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1012939 True 3712 lncRNA 0.43 3 41962712 41966849

Neighbor

gene id symbol gene type direction distance location
LOC110533892 LOC106603262 coding downstream 155832 41712311 ~ 41806880 (-)
LOC110533111 LOC106603235 coding downstream 486733 41474987 ~ 41475979 (-)
LOC110533890 LOC106603263 coding downstream 520962 41256824 ~ 41441750 (-)
LOC110533882 LOC106603268 coding downstream 1109232 40840102 ~ 40853480 (-)
LOC110533881 LOC106603270 coding downstream 1323051 40631165 ~ 40639661 (-)
LOC110533896 LOC106603257 coding upstream 37977 42004826 ~ 42011726 (-)
LOC110534921 NA coding upstream 378867 42345716 ~ 42353693 (-)
LOC118966777 LOC106603212 coding upstream 577762 42544611 ~ 42553273 (-)
LOC110533933 NA coding upstream 607924 42574773 ~ 42583308 (-)
LOC110534922 LOC106603221 coding upstream 622732 42589581 ~ 42593111 (-)
G890367 NA non-coding downstream 16921 41945575 ~ 41945791 (-)
G890356 NA non-coding downstream 37464 41924937 ~ 41925248 (-)
G890337 NA non-coding downstream 62566 41899551 ~ 41900146 (-)
G889877 NA non-coding downstream 271267 41691227 ~ 41691445 (-)
G890377 LOC100380853 non-coding upstream 4107 41970956 ~ 41971195 (-)
G890384 NA non-coding upstream 12236 41979085 ~ 41979290 (-)
G890385 LOC100136012 non-coding upstream 22097 41987711 ~ 41989801 (-)
G890390 NA non-coding upstream 40838 42007687 ~ 42007887 (-)
LOC110533878 LOC106603271 other downstream 1415345 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2069009 39843126 ~ 39893728 (-)
G887329 NA other downstream 2744974 39217313 ~ 39217738 (-)
rpl36a LOC106568029 other downstream 2777218 39183698 ~ 39185578 (-)
G885767 NA other downstream 3722153 38238950 ~ 38240559 (-)
G890360 LOC106603260 other upstream 15852 41982701 ~ 41984417 (-)
G890403 NA other upstream 109892 42076741 ~ 42077947 (-)
LOC110533946 mpp1 other upstream 1092161 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 1226833 43183815 ~ 43248006 (-)

Expression


Co-expression Network