G890138


Basic Information

Item Value
gene id G890138
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41987359 ~ 41989908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1012581
gggggccaaatactttcgcaaggcactgtatacagtggggagaaaaagtatttgatacactgctgattttgcaggttttcctacttacaaagcatgtagacgtctaatttttatcataggtacacgtcaactgtgagagatggaatcaaACAAAAACCCAGAAAACCACTTTGTATAATTAAGTAactaatttgcattttattgcatgacataagtatttgatacatcagaaaagcagaacttcatatttggtacagaaacctttgtttgcaattacagagatcatacatttcctgttgtTCTTGACCATGTTTGCACATACTGTAGCAGGGAtattggcccactcctccataccgaccttctccagatccttcaggttttggggctgtcgctgggcaatacggactttcagctccctcaagattttctattgggtctggagactggctaggccactccaggaccttgagatgcttcttacagagccactccttagttgccctggctgtgtgtttcgggtcgttgtcatgctggaagacccagccacgacccatcttcaatgcttttactgagggaaggaggttgttggccaagatcttgcgatacgtggccccatccatcctcccctcaatacggtgcagtcgtcctgtcccctttgcagaaaagcatccccaaagaatgtttccacctccatgcttcacggttgggatggtgttcttggggttgtactcatccttcatcttcctccaaacacggcgagtggagtttagaccaaaaagcgcTATTTTTGTctaatcagaccacatgaccttctcccattcctcctctggatcattcagatggtcattggcaaacttcagatgggcctgaaCATGCGCTGGTTTGAGCAGGGGCACCTTGCGTgccctgcaggattttaatccacgACGGgtagtgttactaatggttttctttgagactgtggtcccagttctcttcaggtcatttgaccaggtcctgccgtgtggttctgggctgatcctcaccttcctcatgatcatcgatgccccacgaggtgagatcttgcatggagccccagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattttatccctgatgtccttacacagctatcTGGTCTtgaccattgtggagaggttggagtctgatttagtgtgtggacaggtgtcttttacacaggtaatgagttcaaacaggtgcaggtAATGACTTGAGAACGGGAGggcttaaagaaaaactaacaggtctgtgagagctggaattcttactggttggtaggtgatcaaatacttatgtcatgcaataaaatgcaaattaattaaaaatcatacaatttgattttctggattttgtttaaTTTTCAGTCTCACAATTTTCCATCTCACAGTGTACCTTATGATGATAAAaattacatgctttgtaagtaggaaaacaaatacttgttctccccactgtaggtaactgccaaaatatagcaaatgagggatacaaagtctattgaaagcaggtggttccacacaggtgtggctcCTAAGAATTCATATGCTTATGGTCacgtataaaaatgctgggcaagCCCAGTTGCCGATTATTtgggctaccatggctatgcccccataggatgacaatgcacCCATCCACAAGGTATGAGTGGGCActaaatggtttgatgagcatgaaaacaatgtaaaccatatgccatagccgtctcagtcaccagatctcaacccaactgaacacttatgggagattctggagcggtgccCGAGATGGTGTTTTTCACCACCATGTCCAACAAAACACAATGATTGCATTTCTCGTGTAataatggtgtcacatccctccaatagactTCCAGACccatgtagaatctatgccaatgcgcattgaagctgttctggctcgttgTGGTCCGGCGACCTATTAAGACGCTTTagtttagtgttccctttattttggcagttatctgTAGGTTTGACACAGCCCTGCCTGGCTCTGTTTCTCCCTGCCCGAAAGGATTTAGTCACGGAACATTTTGGTCAGAGGTACTGGATGTTGGTTTGGGGGCCTTTGTGGCTTGCGGtgtctaaaaaaatatattttgtcagCCTGAATGTGAGCTATTGGGGTGGGGACTATTGTCTGGATCTGGCACGTAAGAATGGGATGGTTCTATGTAGCCCCTTTCGGGGCACAGTGAGCTATTTTATCAAGTTATGAATGTGATGTCTTTTGAACATCAAAAGCCGCCCATgttatgacattttctggattagATCTATTCATCTTGTCACCATTTTGTATGAGATGTATTAAAT
>TU1012582
gggggccaaatactttcgcaaggcactgtatacagtggggagaaaaagtatttgatacactgctgattttgcaggttttcctacttacaaagcatgtagacgtctaatttttatcataggtacacgtcaactgtgagagatggaatcaaACAAAAACCCAGAAAACCACTTTGTATAATTAAGTAactaatttgcattttattgcatgacataagtatttgatacatcagaaaagcagaacttcatatttggtacagaaacctttgtttgcaattacagagatcatacatttcctgttgtTCTTGACCATGTTTGCACATACTGTAGCAGGGAtattggcccactcctccataccgaccttctccagatccttcaggttttggggctgtcgctgggcaatacggactttcagctccctcaagattttctattgggtctggagactggctaggccactccaggaccttgagatgcttcttacagagccactccttagttgccctggctgtgtgtttcgggtcgttgtcatgctggaagacccagccacgacccatcttcaatgcttttactgagggaaggaggttgttggccaagatcttgcgatacgtggccccatccatcctcccctcaatacggtgcagtcgtcctgtcccctttgcagaaaagcatccccaaagaatgtttccacctccatgcttcacggttgggatggtgttcttggggttgtactcatccttcatcttcctccaaacacggcgagtggagtttagaccaaaaagcgcTATTTTTGTctaatcagaccacatgaccttctcccattcctcctctggatcattcagatggtcattggcaaacttcagatgggcctgaaCATGCGCTGGTTTGAGCAGGGGCACCTTGCGTgccctgcaggattttaatccacgACGGgtagtgttactaatggttttctttgagactgtggtcccagttctcttcaggtcatttgaccaggtcctgccgtgtggttctgggctgatcctcaccttcctcatgatcatcgatgccccacgaggtgagatcttgcatggagccccagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattttatccctgatgtccttacacagctatcTGGTCTtgaccattgtggagaggttggagtctgatttagtgtgtggacaggtgtcttttacacaggtaatgagttcaaacaggtgcaggtAATGACTTGAGAACGGGAGggcttaaagaaaaactaacaggtctgtgagagctggaattcttactggttggtaggtgatcaaatacttatgtcatgcaataaaatgcaaattaattaaaaatcatacaatttgattttctggattttgtttaaTTTTCAGTCTCACAATTTTCCATCTCACAGTGTACCTTATGATGATAAAaattacatgctttgtaagtaggaaaacaaatacttgttctccccactgtaggtaactgccaaaatatagcaaatgagggatacaaagtctattgaaagcaggtggttccacacaggtgtggctcCTAAGAATTCATATGCTTATGGTCacgtataaaaatgctgggcaagCCCAGTTGCCGATTATTtgggctaccatggctatgcccccataggatgacaatgcacCCATCCACAAGGTATGAGTGGGCActaaatggtttgatgagcatgaaaacaatgtaaaccatatgccatagccgtctcagtcaccagatctcaacccaactgaacacttatgggagattctggagcggtgccCGAGATGGTGTTTTTCACCACCATGTCCAACAAAACACAATGATTGCATTTCTCGTGTAataatggtgtcacatccctccaatagactTCCAGACccatgtagaatctatgccaatgcgcattgaagctgttctggctcgttgTGGTCCGGCGACCTATTAAGACGCTTTagtttagtgttccctttattttggcagttatctgTAGGTTTGACACAGCCCTGCCTGGCTCTGTTTCTCCCTGCCCGAAAGGATTTAGTCACGGAACATTTTGGTCAGAGGTACTGGATGTTGGTTTGGGGGCCTTTGTGGCTTGCGGtgtctaaaaaaatatattttgtcagCCTGAATGTGAGCTATTGGGGTGGGGACTATTGTCTGGATCTGGCACGTAAGAATGGGATGGTTCTATGTAGCCCCTTTCGGGGCACAGTGAGCTATTTTATCAAGTTATGAATGTGATGTCTTTTGAACATCAAAAGCCGCCCATgttatgacattttctggattagATCTATTCATCTTGTCACCATTTTGTATGAGATGTATTAAATGACCTCATTGTTTGCAAATCAGGTGTCAAGACTTGGTTGGCCCAGTGGATTTCCTATTAGAAAGGTTCATAAAATTAAGATTATgggatatatatacacacacaaaggg
>TU1012583
gggggccaaatactttcgcaaggcactgtatacagtggggagaaaaagtatttgatacactgctgattttgcaggttttcctacttacaaagcatgtagacgtctaatttttatcataggtacacgtcaactgtgagagatggaatcaaACAAAAACCCAGAAAACCACTTTGTATAATTAAGTAactaatttgcattttattgcatgacataagtatttgatacatcagaaaagcagaacttcatatttggtacagaaacctttgtttgcaattacagagatcatacatttcctgttgtTCTTGACCATGTTTGCACATACTGTAGCAGGGAtattggcccactcctccataccgaccttctccagatccttcaggttttggggctgtcgctgggcaatacggactttcagctccctcaagattttctattgggtctggagactggctaggccactccaggaccttgagatgcttcttacagagccactccttagttgccctggctgtgtgtttcgggtcgttgtcatgctggaagacccagccacgacccatcttcaatgcttttactgagggaaggaggttgttggccaagatcttgcgatacgtggccccatccatcctcccctcaatacggtgcagtcgtcctgtcccctttgcagaaaagcatccccaaagaatgtttccacctccatgcttcacggttgggatggtgttcttggggttgtactcatccttcatcttcctccaaacacggcgagtggagtttagaccaaaaagcgcTATTTTTGTctaatcagaccacatgaccttctcccattcctcctctggatcattcagatggtcattggcaaacttcagatgggcctgaaCATGCGCTGGTTTGAGCAGGGGCACCTTGCGTgccctgcaggattttaatccacgACGGgtagtgttactaatggttttctttgagactgtggtcccagttctcttcaggtcatttgaccaggtcctgccgtgtggttctgggctgatcctcaccttcctcatgatcatcgatgccccacgaggtgagatcttgcatggagccccagaccgagggtgattgaccgtcatcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattttatccctgatgtccttacacagctatcTGGTCTtgaccattgtggagaggttggagtctgatttagtgtgtggacaggtgtcttttacacaggtaatgagttcaaacaggtgcaggtAATGACTTGAGAACGGGAGggcttaaagaaaaactaacaggtctgtgagagctggaattcttactggttggtaggtgatcaaatacttatgtcat

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1012581 False 2441 lncRNA 0.45 1 41987359 41989799
TU1012582 False 2550 lncRNA 0.44 1 41987359 41989908
TU1012583 True 1422 lncRNA 0.46 1 41987359 41988780

Neighbor

gene id symbol gene type direction distance location
LOC110533894 LOC106603260 coding upstream 1961 41979285 ~ 41985398 (+)
LOC110533893 LOC106603261 coding upstream 20559 41954207 ~ 41966800 (+)
LOC118966775 NA coding upstream 583217 41401490 ~ 41404142 (+)
LOC110533888 LOC106603264 coding upstream 747231 41029731 ~ 41240128 (+)
LOC110533887 LOC106603266 coding upstream 1050044 40920569 ~ 40937315 (+)
LOC110533895 LOC106603254 coding downstream 3833 41993741 ~ 42004790 (+)
LOC110533897 LOC106603248 coding downstream 81055 42070963 ~ 42077962 (+)
LOC110533908 LOC106603248 coding downstream 89634 42079542 ~ 42085755 (+)
LOC110533112 NA coding downstream 122249 42112157 ~ 42115188 (+)
LOC110533898 LOC106603251 coding downstream 127325 42117233 ~ 42150557 (+)
G890186 NA non-coding upstream 8596 41978559 ~ 41978763 (+)
G890184 NA non-coding upstream 9682 41977419 ~ 41977677 (+)
G890140 NA non-coding upstream 12158 41974595 ~ 41975201 (+)
G890118 NA non-coding upstream 116395 41870759 ~ 41870964 (+)
G889912 NA non-coding upstream 264284 41722715 ~ 41723075 (+)
G890188 NA non-coding downstream 1169 41991077 ~ 41991452 (+)
G890191 NA non-coding downstream 3293 41993201 ~ 41993503 (+)
G890141 LOC106603257 non-coding downstream 16359 42006267 ~ 42006724 (+)
G890194 NA non-coding downstream 18337 42008245 ~ 42008513 (+)
G890195 NA non-coding downstream 19531 42009439 ~ 42009660 (+)
G889906 LOC106603262 other upstream 270067 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 3175220 38755443 ~ 38815017 (+)
G883966 NA other upstream 5136206 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 5185774 36799376 ~ 36801589 (+)
G883473 om-i other upstream 5691812 36292302 ~ 36295572 (+)
G890228 NA other downstream 88307 42078215 ~ 42154093 (+)
G891133 NA other downstream 992774 42982682 ~ 43109676 (+)
G891188 NA other downstream 1106812 43096720 ~ 43097617 (+)
G891741 NA other downstream 1544408 43534316 ~ 43600230 (+)
G891740 LOC106603170 other downstream 1552558 43542466 ~ 43555517 (+)

Expression


Co-expression Network