G890393


Basic Information

Item Value
gene id G890393
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42009979 ~ 42010456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1012961
ATTTACATCTGTCCCTCGTGTTAAGGCCAACCCTGTTAAGCAAACAATTTACCCCTTTAAAATAATGGACCATTCCACCAAGTTAAATTATTCACAGCAGGTGACATCATTTGGGTCTTCTGAACAGCATGGTGGAAAAGGAAGGaagtcttctctctctttttggtCTATTTATAATTGTTTTATCATCTTTGACTGAGATGGTCGAGcttaacacatcaaccctgtaaGCTCAATTCATGCTAGGGAAACTTGAATTTGATTTATCTTTCATCATGCTCTTCACCACATGGGGAGTAATGGCCAATCTTCACCTAAAACCTGTTATCGTCAACCCTGTTAGAGGCCCAATGGTAACTCTATCAGGTTGATATTATATGTGAATTCATTTGTACAAGGGATACTAGATCAATGAGAAAATGTTAGATTTATCTCAAAGATGAGTTTAATAAATAATAGTTAGGCAGTTACATAAGTg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1012961 True 478 lncRNA 0.37 1 42009979 42010456

Neighbor

gene id symbol gene type direction distance location
LOC110533892 LOC106603262 coding downstream 203099 41712311 ~ 41806880 (-)
LOC110533111 LOC106603235 coding downstream 534000 41474987 ~ 41475979 (-)
LOC110533890 LOC106603263 coding downstream 568229 41256824 ~ 41441750 (-)
LOC110533882 LOC106603268 coding downstream 1156499 40840102 ~ 40853480 (-)
LOC110533881 LOC106603270 coding downstream 1370318 40631165 ~ 40639661 (-)
LOC110534921 NA coding upstream 335260 42345716 ~ 42353693 (-)
LOC118966777 LOC106603212 coding upstream 534155 42544611 ~ 42553273 (-)
LOC110533933 NA coding upstream 564317 42574773 ~ 42583308 (-)
LOC110534922 LOC106603221 coding upstream 579125 42589581 ~ 42593111 (-)
LOC110533934 LOC106603209 coding upstream 598131 42608587 ~ 42616547 (-)
G890390 NA non-coding downstream 2092 42007687 ~ 42007887 (-)
LOC110533896 LOC106603257 non-coding downstream 3523 42004826 ~ 42011726 (-)
G890385 LOC100136012 non-coding downstream 20178 41987711 ~ 41989801 (-)
G890384 NA non-coding downstream 30689 41979085 ~ 41979290 (-)
G890377 LOC100380853 non-coding downstream 38784 41970956 ~ 41971195 (-)
G890395 NA non-coding upstream 5390 42015846 ~ 42017472 (-)
G890396 NA non-coding upstream 6223 42016679 ~ 42038846 (-)
G890397 NA non-coding upstream 7136 42017592 ~ 42025713 (-)
G890399 NA non-coding upstream 42318 42052774 ~ 42062611 (-)
G890401 NA non-coding upstream 60130 42070586 ~ 42070838 (-)
G890360 LOC106603260 other downstream 25562 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 1462612 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2116276 39843126 ~ 39893728 (-)
G887329 NA other downstream 2792241 39217313 ~ 39217738 (-)
G890403 NA other upstream 66285 42076741 ~ 42077947 (-)
LOC110533946 mpp1 other upstream 1048554 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 1183226 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 1673118 43681449 ~ 43686604 (-)
G892965 NA other upstream 1700029 43710485 ~ 43710969 (-)

Expression


Co-expression Network