G890205


Basic Information

Item Value
gene id G890205
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42020758 ~ 42023968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1012652
ccttttatcaccactagcctccatcaccacaagccttcatcaccactagccaccaccaccactagccttcatcaccactagcctccatcaccagtaGCCTcaatcaccactagcctccaccaccactagcctccatcaccactagcctccatcaccacttgcCTTCATCACCACGAGTCTCcataaccactagccttcatcaccattagcTTTCATCACCATtcgcctccatcaccactagtctCCATCACTACTAGCCCCCATAACCACTAgcctccaccaccactagccaccaccactatccttcatcaccactagcctccatcaccactagcctccatcaccaccagccttCATCACCAGTAGCCTCCATTccagtagcctccatcaccactatcctccatcaccactagcctccattaccactagccaccaccaccattagccttcatcaccactagcctccaacaccactagcctccatcaccactagctttCAGCAccattagccttcatcaccactagccttcatcactactagcctccatcactactagcctccatcaccacttgcCTCCACCACCACAAGCCTTTATCACCACGAGCCTCCATCACCAcaagccttcatcaccactagccaccaccaccactagccttcatcaccactagccaccacctcCACtatccttcatcaccactagccaccattagccttcatcaccacgagccaccattagccttcatcaccacgagCCACCATTAGCCTCATTCATCAGTAgactccatcaccactagcctccatcaccactaacctctatcaccagtagcctccatcaccactagccttcatcaccattagccttcatcaccactagccaccacaaatattcatcaccactagccaccactagccttcatcaccattagcctACATCACCActtgcctccatcaccactagcctccaccaccaccagacTCCATTACCACTGGCCTTCATCACCCCTAGCCATCATtatccttcatcaccactagccaccactagcctccataaccactagccaccactagccttcatcgccactagccttcatcaccactaggctccatcaccactagccacaactagcctccatcaccacaagGCACAACTAgccaccatcaccactagccttcatcaccactagccaccatcaccactagcctccatcgccactagcctccatcaccactagccaccactagcctccaccagcactagcctccatcaccttTAGCCTTCATAactactagcctccatcaccactagccttcatcaccactagccttcatcacctctagcctccatcaccactagattccatcaccactagcctccatcaccactagccttcatcaccactagccttcatcaccactagcctccatcaccactagactccatcaccactagcctccatcaccactagcctccaccaccactagccaccaccactatccttcatcaccactagcctccatcaccactagcctccatcaccaccagccttcatcaccagtagcctccatcaccagtagcctccatcaccact

Function

NR:

description
PREDICTED: uncharacterized protein LOC106590899

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1012652 True 1590 lncRNA 0.53 2 42020758 42023968

Neighbor

gene id symbol gene type direction distance location
LOC110533895 LOC106603254 coding upstream 15968 41993741 ~ 42004790 (+)
LOC110533894 LOC106603260 coding upstream 35360 41979285 ~ 41985398 (+)
LOC110533893 LOC106603261 coding upstream 53958 41954207 ~ 41966800 (+)
LOC118966775 NA coding upstream 616616 41401490 ~ 41404142 (+)
LOC110533888 LOC106603264 coding upstream 780630 41029731 ~ 41240128 (+)
LOC110533897 LOC106603248 coding downstream 46995 42070963 ~ 42077962 (+)
LOC110533908 LOC106603248 coding downstream 55574 42079542 ~ 42085755 (+)
LOC110533112 NA coding downstream 88189 42112157 ~ 42115188 (+)
LOC110533898 LOC106603251 coding downstream 93265 42117233 ~ 42150557 (+)
LOC110533900 LOC106603249 coding downstream 141646 42165614 ~ 42306016 (+)
G890201 NA non-coding upstream 5351 42015207 ~ 42015407 (+)
G890199 NA non-coding upstream 6960 42013506 ~ 42013798 (+)
G890195 NA non-coding upstream 11098 42009439 ~ 42009660 (+)
G890194 NA non-coding upstream 12245 42008245 ~ 42008513 (+)
G890141 LOC106603257 non-coding upstream 14034 42006267 ~ 42006724 (+)
G890228 NA non-coding downstream 66858 42078215 ~ 42154093 (+)
G890247 NA non-coding downstream 71031 42094999 ~ 42098654 (+)
G890249 NA non-coding downstream 72996 42096964 ~ 42101322 (+)
G890318 NA non-coding downstream 310341 42334309 ~ 42334516 (+)
G890325 NA non-coding downstream 319935 42343903 ~ 42344109 (+)
G889906 LOC106603262 other upstream 303466 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 3208619 38755443 ~ 38815017 (+)
G883966 NA other upstream 5169605 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 5219173 36799376 ~ 36801589 (+)
G883473 om-i other upstream 5725211 36292302 ~ 36295572 (+)
G891133 NA other downstream 958714 42982682 ~ 43109676 (+)
G891188 NA other downstream 1072752 43096720 ~ 43097617 (+)
G891741 NA other downstream 1510348 43534316 ~ 43600230 (+)
G891740 LOC106603170 other downstream 1518498 43542466 ~ 43555517 (+)

Expression


Co-expression Network