G890403


Basic Information

Item Value
gene id G890403
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42076741 ~ 42077947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1012992
GATTTTATACATATAAACGTGTTTAAGAAGCCAAACGGGTCAAACATGAAGGTATAAAGTACAACAATATGATATACATGCTTGTAAATCACTGCCTAACAGAATGCCGTGCACAATCTTCACAACGCAACCCTCAAGGCATTTGGAGAATTTGCCATAACTGCTGGGAACAGATATCCTCAGATCATTTTCCTCATTATCCCCACAAGTGACTATAATTGCCCTTATATCTGCACAATCTCATCATCATTATCAACTAGGACTGTACATGATACAAATTAAAATAGAGAATTATGACACTGCTGTATTGAGAGAAAAGAATATGCTGTAAATTATTAAGTTATGTGTTCGAAGCATGGATTCAAATATACTAAACTATTTAAATGTTCCTTGTGCACAGAGGTTTATACTATATGGGTTGATTATATTAATAGTTAATGAACATCCACGGAAGTGTGTATTAAATTGTATGCACAGTGTCTTCTAATATATTCATTTAAAAAAGTCCTTGTTTATCAGGTTGTCCCCTCTCTGGTCAAAGCTCGGGTCATAGCTAGAGATGAACCTCTTATTCTTTCCAAACGTAGAGAATGAGTTGTAGACATCCAGTTCCCCCCTGGGTGCAGGCTTCAGAGTGCAGTACCCAGACGGTGTGCCAGGGATGTAGACGTTGTGCTGGTAGTCAGGTGGTGGCTGTGCAGATGGAGGCTGGGTGTAACTCGGAGTCCACGAACGGTTTGGAACCCTTCCTACACTTCCAACCCCTCCAATCCCTTCGACCTGGGAGGACATCTTGTATTCTGCACGCATATGACTACCCCAGGTATAGTACTGCGGTGCCACCGGGCAGGAGAAGCCATCAGGGTCCGGCCTGGGTCTACGTGGGAAGGTCCTCTCCATGGATCTAAAGCTgtagaaagaaaataaaaataaggAACTAGAATGACtccttgttgtgtgtgtgtgtgtgcgttcatgcccctccctaccttcacgctatgctcaaaccctac

Function

NR:

description
protocadherin-10-like isoform X3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1012992 True 1013 TUCP 0.43 2 42076741 42077947

Neighbor

gene id symbol gene type direction distance location
LOC110533896 LOC106603257 coding downstream 65015 42004826 ~ 42011726 (-)
LOC110533892 LOC106603262 coding downstream 269861 41712311 ~ 41806880 (-)
LOC110533111 LOC106603235 coding downstream 600762 41474987 ~ 41475979 (-)
LOC110533890 LOC106603263 coding downstream 634991 41256824 ~ 41441750 (-)
LOC110533882 LOC106603268 coding downstream 1223261 40840102 ~ 40853480 (-)
LOC110534921 NA coding upstream 267769 42345716 ~ 42353693 (-)
LOC118966777 LOC106603212 coding upstream 466664 42544611 ~ 42553273 (-)
LOC110533933 NA coding upstream 496826 42574773 ~ 42583308 (-)
LOC110534922 LOC106603221 coding upstream 511634 42589581 ~ 42593111 (-)
LOC110533934 LOC106603209 coding upstream 530640 42608587 ~ 42616547 (-)
G890401 NA non-coding downstream 5903 42070586 ~ 42070838 (-)
G890399 NA non-coding downstream 14130 42052774 ~ 42062611 (-)
G890396 NA non-coding downstream 37895 42016679 ~ 42038846 (-)
G890397 NA non-coding downstream 51028 42017592 ~ 42025713 (-)
G890395 NA non-coding downstream 59269 42015846 ~ 42017472 (-)
G890405 NA non-coding upstream 10006 42087953 ~ 42089376 (-)
G890448 NA non-coding upstream 76592 42154539 ~ 42154843 (-)
G890450 NA non-coding upstream 80256 42158203 ~ 42158495 (-)
G890455 LOC106603244 non-coding upstream 198835 42276782 ~ 42291152 (-)
G890523 NA non-coding upstream 234858 42312805 ~ 42313012 (-)
G890385 LOC100136012 other downstream 86940 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 92324 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 1529374 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2183038 39843126 ~ 39893728 (-)
G887329 NA other downstream 2859003 39217313 ~ 39217738 (-)
LOC110533946 mpp1 other upstream 981063 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 1115735 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 1605627 43681449 ~ 43686604 (-)
G892965 NA other upstream 1632538 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 2121449 44199178 ~ 44209264 (-)

Expression


Co-expression Network