G890570


Basic Information

Item Value
gene id G890570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42364876 ~ 42375397 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1013178
tagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgaagactctctggtgtagactctctggtgtagaccactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactctcgtgtgtagacccctctctggtttagactctctggtgtagattctcttgtgtagactctctggtgtaaatctgaagcaggtagacccctctctggtgtagactgtctggtgtagactctctggtgtagactctctgttgtagacccctctctggtgtagactatctgatgtagactctctggtgtagacccctctctggtgtagactctccgATGTAGAccctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagacgcTCGGATGTAGACTCtttgatgtagactctctggtgtagactctcgtgtgtagacccctctctggtttagactctctggtgtagattctcttgtgtagactctctggtgtaaatctgaagcaggtagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgttgtagacccctctctggtgtagactatatgatgtagactctctggtgtagacccctctctggtgtagactctccgATGTAGACCCGCTGGTGTAgactggtgtagactctctggtgtagactctctgatgtagactctctggtgtagacgcTCGGATGTAGACTCtttgatgtagactctctggtgtagactctctggtgtagtcCCTCTTGTGTAGACCCATCTCTGGtatagactctctggtgtagactctctggtgtagaccactctctggtgtagactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagTAAGACCCCTCtttggtgtagactctctggtgtagactctctggtgtagactctctggtgtagacccctctctggtgtagactatctgatgtagactctctggtgtagacccctctctggtgtagactctccgATGTAGACCCtgtggtgtagactctctggtgtagactctctggtgtagactccctgatgtagactctctggagtagactctctggtgtagactctctggtgtagactctctgatgtacactctctggtgtagactctctggtgtagactctctggtgtagattctctggtataaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactctctggtgtagaccactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctggtgtagaccactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactctcgtgtgtagacccctctctggtttagactctctggtgtagattctcttgtgtagactctctggtgtaaatctgaagcaggtagacccctctctggtgtagactgtctggtgtagactctctggtgtagactctctgttgtagacccctctctggtgtagactatCTGATGTAGACTCACTAGTGTAGACcgctctctggtgtagactctccgATGTAGAccctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagacgcTCGGATGTAGACTCtttgatgtagactctctggtgtagcctCTCTGGTGTTGTCCCTCTTGTGTAGACCCATCTCTGGtatagactctctggtgtagactctctggtgtagactctctggtgtaaatctgaagcagttagacccctctctggtgtagactctctggtgtagactctctggtgtagactctctgatgtagactctctggtggaGACTCTCTGGTggagactctctggtgtagactctctgatgtagactctctggtgtagactctctgatgtagactctctgatgtagactctctggtgtagactctctgatgtagactctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtttagactctctggtgtagactctctggtgtagaccgtctggtgtagactctctggtgtagactctctggtgtagactttCTGATGTaaactctctggtgtagactctctgatgtatactctctggtgtagacccctctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactcctCTCTGGTGTAAACTCTCTGATGTAGaccactctctggtgtagactctctggtgtagacccctctctggtgtagactctctggtgtagacccctctctggtgtagactctctggtgtaaactCTCttatgtagactctctggtgtagacccctctctggtgtagactctctggtgtaaatctgaagcagtagacccctctctggtgtagactctctggtgtagactctctgatgtagactctctggtgtagactcctCTCTGGTGTAAACTCTCTAATGTAGACcgctctctggtgtagactctctggtgtagacccctctctggtgtagactctctggtgtagaccccgctctggtgtagactctctggtgtaaactctctgatgtagactctctggtgtagacccctctctggtttAGACTGTCTGGTGTAGACCTCTCTCTGGtttagactctctgatgtagactctctggtgtagacccctcccgggtgtagactctctggtgtagactctctggtgtagactctctggtgtagactctctggtgtagattctctgatgtagactctctggtgtagacccctctctggtgtagactctctgatgtatacccctctctggtgtagtctctctggtgtagacccctctctggtgtagactctctggtgtagactctctgatgtagactctttggtgtagacccctctctggtgtagactctctgatgtagactctct

Function

NR:

description
zinc finger protein 271-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1013178 True 3330 lncRNA 0.49 3 42364876 42375397

Neighbor

gene id symbol gene type direction distance location
LOC110534921 NA coding downstream 11183 42345716 ~ 42353693 (-)
LOC110533896 LOC106603257 coding downstream 353150 42004826 ~ 42011726 (-)
LOC110533892 LOC106603262 coding downstream 557996 41712311 ~ 41806880 (-)
LOC110533111 LOC106603235 coding downstream 888897 41474987 ~ 41475979 (-)
LOC110533890 LOC106603263 coding downstream 923126 41256824 ~ 41441750 (-)
LOC118966777 LOC106603212 coding upstream 169214 42544611 ~ 42553273 (-)
LOC110533933 NA coding upstream 199376 42574773 ~ 42583308 (-)
LOC110534922 LOC106603221 coding upstream 214184 42589581 ~ 42593111 (-)
LOC110533934 LOC106603209 coding upstream 233190 42608587 ~ 42616547 (-)
LOC110533935 LOC106603208 coding upstream 274888 42650285 ~ 42707718 (-)
G890559 NA non-coding downstream 6188 42358448 ~ 42358688 (-)
G890542 NA non-coding downstream 20533 42344055 ~ 42344343 (-)
G890538 NA non-coding downstream 27656 42336952 ~ 42337220 (-)
G890526 NA non-coding downstream 49311 42315325 ~ 42315565 (-)
G890588 NA non-coding upstream 29850 42405247 ~ 42405467 (-)
G890595 NA non-coding upstream 39059 42414456 ~ 42414751 (-)
G890606 NA non-coding upstream 49250 42424647 ~ 42424913 (-)
G890768 NA non-coding upstream 111119 42486516 ~ 42486861 (-)
G890762 NA non-coding upstream 147268 42522665 ~ 42531025 (-)
G890403 NA other downstream 286929 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 375075 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 380459 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 1817509 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2471173 39843126 ~ 39893728 (-)
LOC110533946 mpp1 other upstream 683613 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 818285 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 1308177 43681449 ~ 43686604 (-)
G892965 NA other upstream 1335088 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1823999 44199178 ~ 44209264 (-)

Expression


Co-expression Network