G890762


Basic Information

Item Value
gene id G890762
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42522665 ~ 42531025 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1013394
AAAACATTTTATTGATAGCATTTGCACTGTACAACATAACATGAAAGCTGAAACTCTCTCCAATCTAAATCTTTCCATCGGTCCCAGTCTGAGATAGAGTTTTGTATGAGGTGCACCTGTTGCTTACATTTTGTATTCATATTGGTTTTGCCCCTTTTAAACCCGGAGCTAAACTAATTCAATATATTTACCATCTTGCACACTGAGGAGGAACCGACAAGTCAACACAAATGAGTAATTCCTTgaagaaaaataataattgttCGACATTAGAAGAGTGGTGGCGTTGGTCTGTGATaatttttgatattttttatAGCTAACTactgtgtctcagtgtctctcCATACCTTTGTTTTACTGACACATTCCCTCACTCCATAATAACACTTCACATTTCTGTTTTCCTCAATGGGTTTAGACACATATATACTGTAAATGCACACTTCAACAGATAAGTCACACCATTCACATTGCATTACGCAGATGGTCATTTCCCATCATTAGTTAGATCCAGCCAACATACAAGATTATGTATCATCATAGTCATAAACCAAGTCTATTGGGTGTATTTGTAAGCACACATTATAACAGGCATCcgtcagggacagacagacaactaCAGGAATAGACGGGAGAGCAACAGCAAAGCCAACACAGAGGTACGGAGGTCACCGCGACAATAGTAAAACGGACACGACATATTAGAgttaaaacaaacaaataatacATTCGGACAACCTCATATTTTACAGCATAAACACGTTAATAAACAAGTAGATAAGTAGATCATATTGGTCCATAAATCATTCACTGGACGCATGAGTTAAATACAGAGGTCAAGAGGTTATTAAAGGTCCATGTCCCGGTCAAGCACATGGATGGTCGGGCGCATAGAGTAGAATCacaattctatttctatgggagGGATCCCTCTGGGTCAAGCATGCATCTATTTTGGCAAAAAGAACAAAGTCAAAAGAACCCAAAGTAGCCCAGTGTAGTTTCCGGAGGTAGGGTTTCCACATATTAAGCGGGGAGCAGCGTATAGGTTTGAGATTTCTCAGCTGTTTCACACTTCAGTCTGTGTTGTATGATCATCTGATTTACAAACCTTCATGTCACATAAAAAGGCAGGAAGCATTATCCAGATAATTCACCTGCATGCTCCCGGGCTCAGCAATATGACAATCAAGTCCAGGGGTCTCTCAGCAGCCAGGTCGTTCAAGATTGACGTGGAAATTTGACTTGAGGACGTTAGGAAATATCTTcaaaactggccactaggggcaacagggagcgctattaccatcaagtaggcttgggtaAATCCCttgactctggatcagaaggttgcgtgtttgatCACAGTCGTGGATATaggttttacatttttaatttgaaccccatcccaaaccttaacccttatcttaaccattcagaatgagtgcctaaacttaacccttaacttctAAATTTGATGTTTGGAGAAATGGAACGATACAGAGCAGCATGAGCAACAAAAACACTTAGAAATATGACGTTTTGAGAACgtggatgaatgtctaattctgcagtgagactgtgagagcttgttgctcTCAGCTGGTCATTTGGGCGGTTCTGGCTTCATCTGATCCATAGAACAGCATGGAGCCAGGCAGAGACATTATTTGGCAAACACATGGACGCTGACAAGTtagatgagaggatgagagagatagacagacatacaCATTCATCcactctgacagacacacacagataaacaaaACGCGTGCTCGGACGTACGCACAGGGGCGCACGGACTGAAGCACACACGCAGAATTCTCTCTCAATTTTtttcaacactctctctctctccttccttccgcCCGGCGCCCTTTTTACATCACATTTTCGAAGAGCTGCATGGATCTCATCATCATTTCATcctgaggggagaagaggagaaagacgttcgacttgtttgttcaagcctaccagcgttttgtctcagctcctggttTTCCCTACTCGctctttttctcgtcctcctggtttttgacctttgcctgtcctgagcctgtacccgcccgcctgactactgcctgtctctgaccctgagcctgcctgccgtcctgtaccttggcctctgctctggattatcgacccctgcctgccttgacctgtcgtttgcctgtccctgtggttacaataaacattgctacttcacacagtctgcatttggg

Function

NR:

description
Kv channel-interacting protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1013394 True 2231 lncRNA 0.43 2 42522665 42531025

Neighbor

gene id symbol gene type direction distance location
LOC110534921 NA coding downstream 168972 42345716 ~ 42353693 (-)
LOC110533896 LOC106603257 coding downstream 510939 42004826 ~ 42011726 (-)
LOC110533892 LOC106603262 coding downstream 715785 41712311 ~ 41806880 (-)
LOC110533111 LOC106603235 coding downstream 1046686 41474987 ~ 41475979 (-)
LOC110533890 LOC106603263 coding downstream 1080915 41256824 ~ 41441750 (-)
LOC118966777 LOC106603212 coding upstream 13586 42544611 ~ 42553273 (-)
LOC110533933 NA coding upstream 43748 42574773 ~ 42583308 (-)
LOC110534922 LOC106603221 coding upstream 58556 42589581 ~ 42593111 (-)
LOC110533934 LOC106603209 coding upstream 77562 42608587 ~ 42616547 (-)
LOC110533935 LOC106603208 coding upstream 119260 42650285 ~ 42707718 (-)
G890768 NA non-coding downstream 35804 42486516 ~ 42486861 (-)
G890606 NA non-coding downstream 97752 42424647 ~ 42424913 (-)
G890595 NA non-coding downstream 107914 42414456 ~ 42414751 (-)
G890588 NA non-coding downstream 117198 42405247 ~ 42405467 (-)
G890570 NA non-coding downstream 147268 42364876 ~ 42375397 (-)
G890793 NA non-coding upstream 204 42531229 ~ 42531445 (-)
G890797 NA non-coding upstream 12437 42543462 ~ 42543881 (-)
G890798 NA non-coding upstream 12986 42544011 ~ 42544296 (-)
G890827 NA non-coding upstream 51091 42582116 ~ 42582489 (-)
G890843 NA non-coding upstream 93670 42624695 ~ 42624908 (-)
G890403 NA other downstream 444718 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 532864 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 538248 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 1975298 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2628962 39843126 ~ 39893728 (-)
LOC110533946 mpp1 other upstream 527985 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 662657 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 1152549 43681449 ~ 43686604 (-)
G892965 NA other upstream 1179460 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1668371 44199178 ~ 44209264 (-)

Expression


Co-expression Network