G890899


Basic Information

Item Value
gene id G890899
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42645447 ~ 42649991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1013541
GTGACTGAGCGAGTGTAATGACCTACCTgtatgtgtgcatgagtgtgtgagggagaaaaaggagagaaaggggagagggggaaagaagaaaAGACAAGGAATGAGAGTGAAGTGACGATCGATAGACTCAATAAAAGCCAAAGAGGAAAGCAATAGTATAGCGTTGAGAGCAATAATGTCCCTTAGGTGCAGTGGGAGGAGCAACCCATGTTTGTGGACAATGAACTCAAGAGCAGTTTTGTTCCATTCCAACGTGCAAACTGGACAACGTGGCCTGTTGCACAACAAATGTGGGGGCAGATATTTCTCTCATCTTACGGTACACTTTAGAGATCCACAGCCCCATACAACTGGCCAGTGTGATCTGGCCATGTACTGAGCTACTTGGGTTTCTGTCGTTTAACAGTCCTTTTCTGAGGCTCTGGGGACAATGCCGTGGAACTCCATTAGAGTGCACTCTGTTTGAAGGACTTTGGTCTTAGGTTCTGACCCAACTGGGGTCAAAACAGGGAACACCAATCTCATAATAACAAGAGAACATAGTGGTTAAAAtgtcattataataataataataaatatttaTAGAGTTCTTATGAAGGGATTTGACAGTACTACCAAAGTCTGGCTTAGCCTTTTTGACTGTTTAAGTATGATTTAACAGTGATGTTTAATAGGGCTGTCAGTCTACAGTACACAGCTAAAGGCCAGGGAAATTGTTTGGATGGACAACAAACCTAGCATTTGTTGGTGCTTTCCTGGCTCATTGTTTCATAGAAATATTACTATATAGCTATGTccatatataaataatatatgtgaTATATGTGTGTGAGGTGTTGTATTGATATTTTTCAGAAAATATCTCCAAGAATAGGTGGTGAACATTTTTCTTGTTGTGTTTTACTTTGCGTTGTCATGACTTTCTGATGCAGACTCTTGGGAGGGATGTTTTTCTTTCCTCATACCAATCCTCCCTTCAATGTGGTTTTGTAGGTGAACAAAAGGGTTGTGTTGGGGTGAAGTGGTAAGGGCACTGGTTCATCGTTCCCACAGAATGCTAAATGAGGCAGTGTGAGCTTCCACCCAAACTAAATCCTCTGGGTGGAAGCTCACAGTGTGAATGATTTACAGTATGCCAGAGATTTAACCCTAAACTGTAAATGTTGTCAAAGTTCAAAAGAGTATGTGGAAACATGCAAAGGCCAGATTTGTCCTCCTAAAGCCAacacctgtctgtcagtcagttatGACCTTTCCCAGCAATGACCAGACTTCCCCAACACCCACTGGGCTCAGCGTTATGGTCACACAAGTCTTCCAAAAACAAACTACGCCCCCTCCTTTTTCCTCTCGGCTCTTGGTTTATCTCAGTCCTTTCCTCTCGTCTTCCAAAAGTAACAGACGTCTTCCAACAAGAGCCATAAGTAATAACACAGGGCTTAGCACTGATGGAGCCTATGAAAGAAGGGCTGTGGTGTTACTTACCAGGTGGGACTCTACATGGCAACTGAGCCAAAGTGAGCAGAGCTCGATCTACTAACACTCCAGCCACAACAAAAACTGAGACTAGAGAGTATGAACAATGCAGATAGGACTAACAACTTGCAATTGGGACAACCAGCTCGCAAGGACGGCAAACCGCCATCAGCAAGGATGAACAGTTAGCAAGGAGGACTAACAGGCTACAAAACAGTCCAGCAATAAGGACCACAAATCCAGGTTGACTTGAGAATTTTTGCAACGCATGCATGCACCACCATTTACCAACTTGActcctcctccacagtaactaGAGACACACCGgcccctcccctcaccctctctctgagTTTGACACAGACCTGTGTACATTTCTATAGTAAATCACACCTGACTCAAGGGGAGATGTCTTATTATGGAATATTATTCAATAAAACAAACAGATATATTTG
>TU1013540
AGAAGGATGTTTTTGGCATGTTATTGAGGATAAGAGTATGTCTGAGATGGTCTAGAATGTTCTAAGAGGGTCAGAGTATGTAGGCAGTCGTTGAGATATAGTCATGTTCTGAAATATCAAGCCTGCTTTTTGGTGATGTAGACTATCTGAGAACGTTTTTGGGTTAGACTTAATATTAGGGAATGAGGGTGCCTTGCTGAGTTCTAACGTATGAGGAGGAAGCTTCACTAGTTCTGAGAAAAAATGTGAGGCAGAGAAAGTTAGCAAGTTCTGAGAAAAAATGTGAGGCAGAGAAAGTTTACTATGAGAAAGAGGAAGTCAAtgagagtcaaataaagttcaatAGTTCTGAGATAGAATGTGAGGCAGAGAAAGTTTACTATGAGAAAGAGGAAGTCAAtgagagtcaaataaagttcaatAGTTCTGAGATAGAATGTGAGGCAGAGAAAGTTCACTAGTTTTGAGGTAGAATGTGAGACAAACTGGTTTTCTATGTCTGAAACAATGTGAGGCTAAGTTCACTAGTTCTGTTATTGAATGTGAGGCAGTAAAAGTCAGCAAGTTCTGAAAAAGAATGTGAGGCAGAGAAAGTTTACTATGAGAAAGAGGAAGTCAATGAGAGTCAAAGAAAGTTTAATTGTTTTGAAATAGAATGTGAGGCTGAAAGAGTTCACGTTTTGTGATAGAATGTGTAGGAGAAAAAGAGGAAGTCACTTCGAGTCAAAGGAAGTTCACTAGTTCTGAGAAAGAATGTAAGACAGCGAAAGTTTTAAGAAATAATGTGAGGCAGAGAACGTTCTGAGATAGAATGTGGGACAGAGAAAGTGCACTAGTTCTGAGAAAGAAAGTAAGACAAAGAAAGTTCAATTGTTCTGAGATAAAATGTGAGGCAGAAAAAGTTTACTATGAGAAAGAGTAAGTCAATGAGAGTCAAAGGAAATTCAATAGTTTTGAAATAGAATGTGAGGCAGAAAAAGTTCACTCATTTTGTGATAGATTGTGAAGCAGAGAAAGAGGAGGTCACTTAGAGTCATAGGAAGTTCAATAGTTCTGAGATAGAATGTGAGGCAGAGAAAGTTCACTAGTTTTGAGGTAGAATGTGAGACAAACTGGTTCACTAGTTCTGATATTGAATGTGAGGCATAGACAGTTCACTAGTTCTGAAATAGAATGTGAGGCAAAGTTCACTCATTCTGATGTTGAATGGGAGACAGTGAAAGTTCACTAGTTCTGATATTGAATGTGAGTCATAGACAGTTCATTAGTTCTGATATTGAATGTGAGGCATAGACAGTTCACTAGTTCTGAAATAGAATGTGAGGCAAAGTTCACTCATTCTGATATTGAATGTGAGACAGTGAAAGTTCACTAGTTCTGATATTGAATTTGAGGCAGTGAAATGATATTAAATGCGAAGCAGGACTGtttggcagtggtggaaaaagtccccaactgtcatacttgagtaaaagtaaagataccttaatagaaactgactcaagtaaaagtcaaagtcacccagtaaaattctacttaagtaaaagtctaaaagtatttggtttaaaatatacttaagtatcaaaagtaaatgtaattcctaaaatgtacttaagtatcaaaagtaaaagtatgaatcatataaaattccttatattgagCAAACCAGACACCATCATTTtcaatttttttcttttttacagatagccagggacacactccaacattcagacattatttacaaatgacgcatgtgtgtttagtgagtctgccagatcagagacagtaggcagtaggatgaccagggatgttctctgtttagttagtccacTAGATCAGCGGCagtaggatgaccagggatgttctctgtttagttagtccactagatcagaggcagtaggaatgaccagggatgttctctgtttagtgagtccactagatcagcggcagtagggatgaccagggatgttctctgtttagtgaggccgtcagatcagaggcagtaggaatgaccagggatgttcggttgataagtgcgtgaatttgactattttcctgtcctgctaagcattcaaaatgtaacgagtacttttgagtgtcgaggaaaatgaatggagtaaaaaatacaatATCATCTTAAGGAATGATTTGAAGTAAAAttattgtcaaaaatataaatagtaaagtaaagtatagctaccccaaaaaacgacttaagtatttttacttaagtactttacaccactgctcttTGGTTCTGATATTGAGAGCAAGCCAGAGGGATATTTAGCTGGTTGAGGCAGAAATAATGAATTAGCTATCATAAAGTAAGGCAAAGAGAGCTCGTTTCTTGATTAGAGCAGAATTTAAGGCAGAGCAGGTCCCacaaggggagggggaggggtagtgATGTTGAGAATACAAGGACAGTtgtggttcacacacacacacgctcgcacatGTCCGCTTCGAAGTCACACTCCACTTAAAGCGCAATCTCACCAAAAGGTGTCCTATATGTCTACTGCCCATTAACCTTCCCTCCACACACTGTGTGCTTGTACATGCGTGTGCGTTCGTTtgcacgtgtgtgtctgtgtgggtgagtgAAAGAGTGACTGAGCGAGTGTAATGACCTACCTgtatgtgtgcatgagtgtgtgagggagaaaaaggagagaaaggggagagggggaaagaagaaaAGACAAGGAATGAGAGTGAAGTGACGATCGATAGACTCAATAAAAGCCAAAGAGGAAAGCAATAGTATAGCGTTGAGAGCAATAATGTCCCTTAGGTGCAGTGGGAGGAGCAACCCATGTTTGTGGACAATGAACTCAAGAGCAGTTTTGTTCCATTCCAACGTGCAAACTGGACAACGTGGCCTGTTGCACAACAAATGTGGGGGCAGATATTTCTCTCATCTTACGGTACACTTTAGAGATCCACAGCCCCATACAACTGGCCAGTGTGATCTGGCCATGTACTGAGCTACTTGGGTTTCTGTCGTTTAACAGTCCTTTTCTGAGGCTCTGGGGACAATGCCGTGGAACTCCATTAGAGTGCACTCTGTTTGAAGGACTTTGGTCTTAGGTTCTGACCCAACTGGGGTCAAAACAGGGAACACCAATCTCATAATAACAAGAGAACATAGTGGTTAAAAtgtcattataataataataataaatatttaTAGAGTTCTTATGAAGGGATTTGACAGTACTACCAAAGTCTGGCTTAGCCTTTTTGACTGTTTAAGTATGATTTAACAGTGATGTTTAATAGGGCTGTCAGTCTACAGTACACAGCTAAAGGCCAGGGAAATTGTTTGGATGGACAACAAACCTAGCATTTGTTGGTGCTTTCCTGGCTCATTGTTTCATAGAAATATTACTATATAGCTATGTcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1013541 False 1931 lncRNA 0.43 1 42645447 42647377
TU1013540 True 3412 lncRNA 0.39 1 42646580 42649991

Neighbor

gene id symbol gene type direction distance location
LOC110533934 LOC106603209 coding downstream 28900 42608587 ~ 42616547 (-)
LOC110534922 LOC106603221 coding downstream 52336 42589581 ~ 42593111 (-)
LOC110533933 NA coding downstream 62139 42574773 ~ 42583308 (-)
LOC118966777 LOC106603212 coding downstream 92174 42544611 ~ 42553273 (-)
LOC110534921 NA coding downstream 291754 42345716 ~ 42353693 (-)
LOC110533935 LOC106603208 coding upstream 294 42650285 ~ 42707718 (-)
LOC110533936 LOC106603206 coding upstream 162596 42812587 ~ 42828697 (-)
LOC110533115 LOC105024620 coding upstream 203407 42853398 ~ 42859770 (-)
LOC110533116 LOC106603218 coding upstream 213224 42863215 ~ 42866115 (-)
LOC110533943 LOC106603199 coding upstream 384005 43033996 ~ 43038340 (-)
G890852 NA non-coding downstream 6537 42638708 ~ 42638910 (-)
G890815 NA non-coding downstream 15348 42629803 ~ 42630099 (-)
G890846 NA non-coding downstream 17548 42627685 ~ 42627899 (-)
G890843 NA non-coding downstream 20539 42624695 ~ 42624908 (-)
G890827 NA non-coding downstream 62958 42582116 ~ 42582489 (-)
G890900 NA non-coding upstream 5206 42655197 ~ 42655421 (-)
G890903 NA non-coding upstream 8800 42658791 ~ 42658995 (-)
G890905 NA non-coding upstream 10311 42660302 ~ 42660501 (-)
G890906 NA non-coding upstream 10843 42660834 ~ 42661172 (-)
G891338 NA non-coding upstream 202087 42852078 ~ 42852558 (-)
G890403 NA other downstream 567500 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 655646 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 661030 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 2098080 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2751744 39843126 ~ 39893728 (-)
LOC110533946 mpp1 other upstream 409019 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 543691 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 1033583 43681449 ~ 43686604 (-)
G892965 NA other upstream 1060494 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1549405 44199178 ~ 44209264 (-)

Expression


Co-expression Network