G891338


Basic Information

Item Value
gene id G891338
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42852078 ~ 42852558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1014050
ctccctgacgaaggccatgcagctatgaggattctgtgttatgcactataacCCGTTACCATATACAgtatgtgattgaatattatctgctgttggcttgtgtggatgtatgtatgtgttatgcaacatagctgacttgaaacattgttaacagtttcagggccatgggcctttctcatgatggaaaaatacagaatgaCATGAATGACATAAAGACAGGAcctgtgcaatgagttggggggtcacattcagaacgtagtgttgcgagaacaaacggtcttttgttagataacaagagccaggtgcctgataactgtatattctacacagctacaacgactgaccgctgaagcgcttagggggctgggaccagcctctgcgccaacaatcaacgataggctgggtgagtctaaaccacgtccagtctctactctgacaggccggctcagAAGCAGTAACTACCTCTGTTAGAGTATattta

Function

NR:

description
RNA polymerase-associated protein RTF1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1014050 True 481 lncRNA 0.45 1 42852078 42852558

Neighbor

gene id symbol gene type direction distance location
LOC110533936 LOC106603206 coding downstream 23381 42812587 ~ 42828697 (-)
LOC110533935 LOC106603208 coding downstream 144360 42650285 ~ 42707718 (-)
LOC110533934 LOC106603209 coding downstream 235531 42608587 ~ 42616547 (-)
LOC110534922 LOC106603221 coding downstream 258967 42589581 ~ 42593111 (-)
LOC110533933 NA coding downstream 268770 42574773 ~ 42583308 (-)
LOC110533115 LOC105024620 coding upstream 840 42853398 ~ 42859770 (-)
LOC110533116 LOC106603218 coding upstream 10657 42863215 ~ 42866115 (-)
LOC110533943 LOC106603199 coding upstream 181438 43033996 ~ 43038340 (-)
LOC110533944 LOC106603198 coding upstream 195097 43047655 ~ 43056228 (-)
LOC110533946 mpp1 coding upstream 205053 43057611 ~ 43070230 (-)
G890906 NA non-coding downstream 190906 42660834 ~ 42661172 (-)
G890905 NA non-coding downstream 191577 42660302 ~ 42660501 (-)
G890903 NA non-coding downstream 193083 42658791 ~ 42658995 (-)
G890900 NA non-coding downstream 196657 42655197 ~ 42655421 (-)
G890899 NA non-coding downstream 202087 42645447 ~ 42649991 (-)
G891339 NA non-coding upstream 244 42852802 ~ 42853366 (-)
G891343 NA non-coding upstream 14241 42866799 ~ 42869388 (-)
G891356 NA non-coding upstream 30695 42883253 ~ 42886001 (-)
G891384 NA non-coding upstream 74942 42927500 ~ 42927709 (-)
G891387 NA non-coding upstream 77381 42929939 ~ 42930205 (-)
G890403 NA other downstream 774131 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 862277 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 867661 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 2304711 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2958375 39843126 ~ 39893728 (-)
LOC110533954 LOC106603192 other upstream 341124 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 831016 43681449 ~ 43686604 (-)
G892965 NA other upstream 857927 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1346838 44199178 ~ 44209264 (-)

Expression


Co-expression Network