G891376 (LOC106603203)


Basic Information

Item Value
gene id G891376
gene name LOC106603203
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43004237 ~ 43008599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1014093
TTTGGATTAATATTACTCACAATAATGTCACAGAAACATCACAGGGTGTTTGAGACAGGTCTGGATCAGGCCTCCTTTGataggagttttttttttttcttcttttaaaACAGTGCAGCTTCAATAAACAGTCAGAGGAGAGCAAGATTACAACCTTGAAATGATACTCATGAGGACAGAACACGGAAGGAACCCAAAGCCACACCTCGCTATACATCCCTAAAAGTCTTGTTCAAAAGTGGCTAAAACTACAAATACTGATAATATCCATCATAAAATCACAAATGCGTCACAATTTTATGAATTTCGTATAATGCAAAAAAGTTGAAAAAAGGTATTGTTTTTATCAGTTAGATACAGTACAAAGACATCATTCTATTCATTTACCAGTAAGCGTAATGACGCGGTTCTAAGCACCAACCTCTCGGTTTCAGTCATATTCATTGACTTATATTCATAGATCATTTATACACAGTTAGTGAGGGGTTGGGCGAGGCAAGAGGGGGTTGAGCACCATTAAAATCCAACCTCCCCCTGTTTGCCCTTCCCTGTCCACACACAATAGGAAACTTTAAAAATAGCTGGTGTCCCCAGAGAAGCACCATCAATatgcaataaatacatttaagaaaacaaaacatatacaTGTATAAATAAAGTCACAATTTACAATTCTTCCATTTTCTCTGTAATCCAGAAAAGAAGGAGATAGCAACCAAAAAAAGAGGTATGAAAACAGGGAGAACGATACCATTTATCAAAAGAAAAAGGAAGGGGGATCCTTTTTAGGGTATATTGTAGCAATCACACCTCTCTCTACCAAACATTATTTAGGATTATTATGCAAAAACTAAAATCACAATAAAACAGACTCGATTTCCAACAAAGAGTGAAACCAGATTAGTCCTCTCGTAAACCCGTATTTCTTAAATGAATATTCCTAACGCTTTTCGAAAACGTTTTCTGCATGTTTGCATTTTTCTCTTTCATCTAAATACAGTTCGCAAGGCCAATGAGGTGTACTTCTAGGCTGGTTAAACTTTTGAAATACCTAGGTCAGAATAAATGAAATGGAAATAGCACCCCAAAGAGTATACAGACAGGAATTATAAATGTCAGAGTTCACCTGAATAGAAAACAAAACCAAaacaatgtaatttcattgagaCTATTGGCTACTTTGCTAGTGAAGCGATTCCCCTGCTGTTAGCGTCGCAACACAGTAAATTCATGGATGTAGAATAACTAGATTGGTGTAAAAAAGTTCCATTGGATTTGCATAAAAGTACCTGAATTAATGCACCATATACCGGCTACTTGACGCTTTTGAATCACAGCAGTGTCCGTTTTAAATAAGACCTGATTTTTCAGTGCTAACTATGTtcacattttctgtagttgtcTGACATGTTTTTAACGAGTAGTTGTACCAGTCTAGTCATTCTATCTCAAGACTCAAGTCCAATCAGCAGCTGGTAGGAGGGGAAGACAGTGAGCTGGAATTCAATTGGCTGACGGACGATATCTTACGGTGATGTAAACAACACTGAGTAAACATGGTTGGCTGTTCACCAAGtgttagcagtagtagtattccTTGAAGACGACGCCTGTGCTGCCACTGTGTATGAGTTTTGGTTATGGCTGTTGGACAACAGAGGCTGTCGTAGGTTCTCATCAGCTCCTCCACGCGGTACTGCTCCAGCACCACAACTCCAGCCAGCGAGGGGCTCTTGGACACAGTCCGGGCACAGTCCTCACAGTGCACCATGTAGGTCTTCCTATTGCCAGACTCACTGGTCACAAACAGCAGGTCAAACACCTCCACGTCACACTCGTTGCAGTAGTAGGCTGGTTCGTCTTTCACACGGCTCTGATAAGAGATCTTCTTCCCTGCAGCAACCAGCTGGTCTCTCAGAATCTGGATGTGCTTGATGGACTGTAGGAGAcaatgtttgACCATCTTGTAGGTTTCTTGGTCTGTGATCTTGATAGTGCGGGCCACATTCCAGGAGACATGGATCATGGGAACGATGGACTTGACCTTCTTCACCTCGTTCCACTCAAAGCGCTCCAGAGCCAGCTGATACTGGTATGAGTTGAGAGGTCCCACATTCCAGGCGATGTTGTTGCACCAGCCCACAGCCTGCACCCAGTGGATGGACCCTGCGTTGATCCACACCAGGTCCCCTGGTCTCTGGATGAAGCGGTACACCGGGATGTTGGAGCGGTACAGGTCCTCCAGAACAGGCCACCAGGACCCCGTCAGGTAGTCTACTCCATGCTTCTCACAGAAGTTGTTGACGTGCTCCCAGTAGTGCTCATGGACTGCAAACCACTCACAATCCCCCGGCCCGATGTTGATGTTCACAGAGCAGAAGTTATTATTCTCCTGGTGGCCTGAAAACAGACATACACAGAGATATTTAAGCCCGTGTTCAGATGCATGCAATACGCACCTAAAAACACACCCAGGTAACACTGACCAGGCGTGCGGCTCCCGGGGACCTTCATGTAGAGCTGGACGGTGTTCATGCCCAGGATGGTGTGTCCCACGTGGCTCAGCATGTTTCCATTGAACTCCACACGCATGAAGGCTGGCAGCTTCAGCAGCTCCTGCAGCTGGGGCTTCC
>TU1014094
TTTGGATTAATATTACTCACAATAATGTCACAGAAACATCACAGGGTGTTTGAGACAGGTCTGGATCAGGCCTCCTTTGataggagttttttttttttcttcttttaaaACAGTGCAGCTTCAATAAACAGTCAGAGGAGAGCAAGATTACAACCTTGAAATGATACTCATGAGGACAGAACACGGAAGGAACCCAAAGCCACACCTCGCTATACATCCCTAAAAGTCTTGTTCAAAAGTGGCTAAAACTACAAATACTGATAATATCCATCATAAAATCACAAATGCGTCACAATTTTATGAATTTCGTATAATGCAAAAAAGTTGAAAAAAGGTATTGTTTTTATCAGTTAGATACAGTACAAAGACATCATTCTATTCATTTACCAGTAAGCGTAATGACGCGGTTCTAAGCACCAACCTCTCGGTTTCAGTCATATTCATTGACTTATATTCATAGATCATTTATACACAGTTAGTGAGGGGTTGGGCGAGGCAAGAGGGGGTTGAGCACCATTAAAATCCAACCTCCCCCTGTTTGCCCTTCCCTGTCCACACACAATAGGAAACTTTAAAAATAGCTGGTGTCCCCAGAGAAGCACCATCAATatgcaataaatacatttaagaaaacaaaacatatacaTGTATAAATAAAGTCACAATTTACAATTCTTCCATTTTCTCTGTAATCCAGAAAAGAAGGAGATAGCAACCAAAAAAAGAGGTATGAAAACAGGGAGAACGATACCATTTATCAAAAGAAAAAGGAAGGGGGATCCTTTTTAGGGTATATTGTAGCAATCACACCTCTCTCTACCAAACATTATTTAGGATTATTATGCAAAAACTAAAATCACAATAAAACAGACTCGATTTCCAACAAAGAGTGAAACCAGATTAGTCCTCTCGTAAACCCGTATTTCTTAAATGAATATTCCTAACGCTTTTCGAAAACGTTTTCTGCATGTTTGCATTTTTCTCTTTCATCTAAATACAGTTCGCAAGGCCAATGAGGTGTACTTCTAGGCTGGTTAAACTTTTGAAATACCTAGGTCAGAATAAATGAAATGGAAATAGCACCCCAAAGAGTATACAGACAGGAATTATAAATGTCAGAGTTCACCTGAATAGAAAACAAAACCAAaacaatgtaatttcattgagaCTATTGGCTACTTTGCTAGTGAAGCGATTCCCCTGCTGTTAGCGTCGCAACACAGTAAATTCATGGATGTAGAATAACTAGATTGGTGTAAAAAAGTTCCATTGGATTTGCATAAAAGTACCTGAATTAATGCACCATATACCGGCTACTTGACGCTTTTGAATCACAGCAGTGTCCGTTTTAAATAAGACCTGATTTTTCAGTGCTAACTATGTtcacattttctgtagttgtcTGACATGTTTTTAACGAGTAGTTGTACCAGTCTAGTCATTCTATCTCAAGACTCAAGTCCAATCAGCAGCTGGTAGGAGGGGAAGACAGTGAGCTGGAATTCAATTGGCTGACGGACGATATCTTACGGTGATGTAAACAACACTGAGTAAACATGGTTGGCTGTTCACCAAGtgttagcagtagtagtattccTTGAAGACGACGCCTGTGCTGCCACTGTGTATGAGTTTTGGTTATGGCTGTTGGACAACAGAGGCTGTCGTAGGTTCTCATCAGCTCCTCCACGCGGTACTGCTCCAGCACCACAACTCCAGCCAGCGAGGGGCTCTTGGACACAGTCCGGGCACAGTCCTCACAGTGCACCATGTAGGTCTTCCTATTGCCAGACTCACTGGTCACAAACAGCAGGTCAAACACCTCCACGTCACACTCGTTGCAGTAGTAGGCTGGTTCGTCTTTCACACGGCTCTGATAAGAGATCTTCTTCCCTGCAGCAACCAGCTGGTCTCTCAGAATCTGGATGTGCTTGATGGACTGTAGGAGAcaatgtcttgACCATCTTGTAGGTTTCTTGGTCTGTGATCTTGATAGTGCGGGCCACATTCCAGGAGACATGGATCATGGGAACGATGGACTTGACCTTCTTCACCTCGTTCCACTCAAAGCGCTCCAGAGCCAGCTGATACTGGTATGCTGAAAGGGCAAAGACGACACACAAGGCTCACATTAGCAGTGTTAAGGCCAAATAATGGCAGTGTTCAGACACTATAGAGTACATTTGGAGAGGGATTTGaacagtatactgaacaaaaatataaaca

Function

NR:

description
lysine-specific demethylase 6B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1014093 False 2633 lncRNA 0.44 6 43004237 43008599
TU1014094 True 2226 lncRNA 0.41 4 43005933 43008599

Neighbor

gene id symbol gene type direction distance location
LOC110533116 LOC106603218 coding downstream 138122 42863215 ~ 42866115 (-)
LOC110533115 LOC105024620 coding downstream 144467 42853398 ~ 42859770 (-)
LOC110533936 LOC106603206 coding downstream 175540 42812587 ~ 42828697 (-)
LOC110533935 LOC106603208 coding downstream 296519 42650285 ~ 42707718 (-)
LOC110533934 LOC106603209 coding downstream 387690 42608587 ~ 42616547 (-)
LOC110533943 LOC106603199 coding upstream 25397 43033996 ~ 43038340 (-)
LOC110533944 LOC106603198 coding upstream 39056 43047655 ~ 43056228 (-)
LOC110533946 mpp1 coding upstream 49012 43057611 ~ 43070230 (-)
LOC110533948 LOC106603196 coding upstream 79687 43088286 ~ 43095752 (-)
LOC110533951 mpp1 coding upstream 109969 43118568 ~ 43140706 (-)
G891393 NA non-coding downstream 60972 42942981 ~ 42943265 (-)
G891387 NA non-coding downstream 74032 42929939 ~ 42930205 (-)
G891384 NA non-coding downstream 76528 42927500 ~ 42927709 (-)
G891356 NA non-coding downstream 118236 42883253 ~ 42886001 (-)
G891343 NA non-coding downstream 134849 42866799 ~ 42869388 (-)
G891440 NA non-coding upstream 6102 43014701 ~ 43020440 (-)
G891469 NA non-coding upstream 66929 43075528 ~ 43075844 (-)
G891483 LOC106603194 non-coding upstream 95955 43104554 ~ 43105552 (-)
G891425 NA non-coding upstream 99447 43108046 ~ 43111579 (-)
G891488 NA non-coding upstream 133239 43141838 ~ 43142068 (-)
G890403 NA other downstream 926290 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 1014436 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 1019820 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 2456870 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 3110534 39843126 ~ 39893728 (-)
LOC110533954 LOC106603192 other upstream 185083 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 674975 43681449 ~ 43686604 (-)
G892965 NA other upstream 701886 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1190797 44199178 ~ 44209264 (-)

Expression


Co-expression Network