G891157 (LOC106603199)


Basic Information

Item Value
gene id G891157
gene name LOC106603199
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43033997 ~ 43036826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1013835
GTATTATAAATCCTTTATTGAGAGACATAAATTacaaaaataatataatatatagccCTATTATGAGGTGGGTCAAACTGTTATGTGATGCTTGTCATTTAATCTGAACCTGTGAGCGACCAATGAAAGGAGATTTGAGCAATTAAGTTAGTGTCATCAAACATTAAGTGAAAAAACAAGATAATTCACTTCATTGAGTACTCCTCaagaataaaaacattttttgggtCATCGTAACCTTGCTCGTCATGGTATCCATGCACGAGGCTGAATTTCCCTGATTGGTGGACTGGGGTGTGAGGTTAGCATGGTTGGTTGTTAATATTGGTCAGCAGTTTGTGATGTGGGGCCTTATATGGGGCAGTGAAAGCCCCGGGAGCCATTGTTCCACGCCCATCCTCATCAACCTGGCCCATCAAGATGTAAGGCATTCCTTTGCGGATGATAGGGCACTTCTTGCAGGCTGACACCAGTTTGACAGACATGTTCTCTCCAGCCTGGGTGATGGTCAGCTGGCCAGCTTTGTAGGCCTTGATGAGAGACACACTGATATAGACACTGCCCTGAGGACCAGGGGTCAGCGCTGTCACCTTACCCGTgatcaCAAATTCACTGGCACAGAAACTGCTCTTGATATTTCCATCCCTCTTACATGCCTTTGCACACAGTGGGTTCAAGTGAACTGGCTTCTTGATGTCTGGTTTAGTAACTCTGACCCTGTCTGGGCCTGGCTTGTTTGGTGGGCGGGTCCTGACTGGTTTGATTGGTTTGGGCTTGGCAGTGGGCTCCTGGGGCTGTGGGGTTGGGGGGGCCTGGTGTCTGGTTGtagtgggtggttgggtggtagtggtggtgatgactGTTCTCTCAGGCAggatgggtttaacaacagtctTCCTGGGGACTGTAATGCGCCAGGTACATTTGCTGTTGGGTTTGTAGTAGTTTGGAAATCCTTCACTGCCCACAAAGCCTGAGTCTGCAACCATGTCTCCCCCACAGTGGAACACAGGCCTGAGAGAGAGTAGGGTGGGAAAAAAGTGATGTATTATCATGTACTGTACTTTATAAACATTGGCTTAGGCTTACCACATCACTATCACTTTGGGAAactcgcaca

Function

NR:

description
procollagen C-endopeptidase enhancer 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1013835 True 1120 lncRNA 0.47 5 43033997 43036826

Neighbor

gene id symbol gene type direction distance location
LOC110533942 NA coding upstream 6960 43014708 ~ 43028438 (+)
tmem88a LOC106603200 coding upstream 20309 43010400 ~ 43013688 (+)
kdm6bb LOC106603203 coding upstream 25375 42985712 ~ 43008622 (+)
LOC118966779 NA coding upstream 77774 42951638 ~ 42956223 (+)
LOC110533939 LOC106603204 coding upstream 110522 42887815 ~ 42923475 (+)
LOC118937073 NA coding downstream 48073 43084899 ~ 43085032 (+)
trnas-gcu-7 NA coding downstream 48617 43085443 ~ 43085524 (+)
LOC118966780 NA coding downstream 57982 43094808 ~ 43096478 (+)
LOC110533947 LOC106603194 coding downstream 64631 43101457 ~ 43108792 (+)
LOC110533950 dkc1 coding downstream 75116 43111942 ~ 43118330 (+)
G891142 NA non-coding upstream 40384 42993042 ~ 42993613 (+)
G891093 NA non-coding upstream 107113 42926681 ~ 42926884 (+)
LOC110533937 LOC106603205 non-coding upstream 146735 42866768 ~ 42887262 (+)
G891055 NA non-coding upstream 181248 42852207 ~ 42852749 (+)
G891171 NA non-coding downstream 26268 43063094 ~ 43070131 (+)
G891207 NA non-coding downstream 110112 43146938 ~ 43147169 (+)
G891209 NA non-coding downstream 111347 43148173 ~ 43150220 (+)
G891211 NA non-coding downstream 112553 43149379 ~ 43149739 (+)
LOC110533952 LOC106603217 non-coding downstream 126705 43161094 ~ 43164195 (+)
G890228 NA other upstream 880219 42078215 ~ 42154093 (+)
G889906 LOC106603262 other upstream 1316705 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 4221858 38755443 ~ 38815017 (+)
G883966 NA other upstream 6182844 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 6232412 36799376 ~ 36801589 (+)
G891188 NA other downstream 59894 43096720 ~ 43097617 (+)
G891741 NA other downstream 497490 43534316 ~ 43600230 (+)
G891740 LOC106603170 other downstream 505640 43542466 ~ 43555517 (+)
G891847 NA other downstream 675719 43712545 ~ 43713082 (+)
LOC110533965 LOC106603163 other downstream 696731 43732222 ~ 43741030 (+)

Expression


Co-expression Network