G891742 (LOC106603169)


Basic Information

Item Value
gene id G891742
gene name LOC106603169
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43537523 ~ 43538003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1014471
ATGTGATGGCCACACAGTGATGTGGGGGTGAGAGTGGTACCAACCAACTACACGCATCGGCCGTCCAGTCATTTCAGCCAACCTCTCCGCTTCGGTTGCCGCTGAAGACAGCTGCTCAGGCGAAATTTCCACGCGATCCTTCCTCTTGTCCGAGCGTCGGAGAATAATAACAGAATGAATGTGGACGATGCGGTTGGTGTCCACCTATGTAAACAAACCAGGTGACTTTAGAAAGCAGAATAATTAACAGGGTAGCCAGCTAGAATCAATATCAGGTGCCCCTAATACCAAGTTGGAGGTATAGGCCAATT

Function

NR:

description
PREDICTED: lys-63-specific deubiquitinase BRCC36-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1014471 True 311 lncRNA 0.50 2 43537523 43538003

Neighbor

gene id symbol gene type direction distance location
LOC110533955 LOC106603171 coding upstream 76508 43306783 ~ 43461015 (+)
LOC110533952 LOC106603217 coding upstream 373328 43161094 ~ 43164195 (+)
LOC118937075 NA coding upstream 421880 43115566 ~ 43115643 (+)
LOC118937079 NA coding upstream 422462 43114923 ~ 43115061 (+)
LOC118937087 NA coding upstream 423119 43114194 ~ 43114404 (+)
LOC110533958 LOC106603168 coding downstream 28232 43566235 ~ 43613250 (+)
LOC110533964 LOC106603165 coding downstream 176573 43714576 ~ 43722473 (+)
LOC110533965 LOC106603163 coding downstream 194219 43732222 ~ 43741030 (+)
LOC110533969 LOC106603161 coding downstream 227082 43765085 ~ 43769945 (+)
LOC110533970 calm1 coding downstream 234878 43772881 ~ 43779783 (+)
G891738 NA non-coding upstream 4392 43532867 ~ 43533131 (+)
G891236 NA non-coding upstream 344793 43192336 ~ 43192730 (+)
G891235 LOC106563397 non-coding upstream 345577 43191691 ~ 43191946 (+)
G891209 NA non-coding upstream 387303 43148173 ~ 43150220 (+)
G891745 NA non-coding downstream 2751 43540754 ~ 43592525 (+)
G891740 LOC106603170 non-coding downstream 4463 43542466 ~ 43555517 (+)
G891748 NA non-coding downstream 9422 43547425 ~ 43599551 (+)
G891765 NA non-coding downstream 77896 43615899 ~ 43622948 (+)
G891767 NA non-coding downstream 114667 43652670 ~ 43653498 (+)
G891133 NA other upstream 427847 42982682 ~ 43109676 (+)
G891188 NA other upstream 439906 43096720 ~ 43097617 (+)
G890228 NA other upstream 1383745 42078215 ~ 42154093 (+)
G889906 LOC106603262 other upstream 1820231 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 4725384 38755443 ~ 38815017 (+)
G891847 NA other downstream 174542 43712545 ~ 43713082 (+)
G891856 NA other downstream 204914 43742917 ~ 43743490 (+)
G891951 LOC106603153 other downstream 400409 43938412 ~ 43940557 (+)

Expression


Co-expression Network