G892157


Basic Information

Item Value
gene id G892157
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44301794 ~ 44304579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1014956
gctgaataaaaaaaCGTATTGTGGGTTTAACTAAACCTAATCAGTCACTGGTTAAGTTTGGTAGTGCACATTATATAAATTACAAAGGAAAGAAAACAGTGAAGTTACAGGGTTCGATATATTTTAGTCTCTacggctgcgtttACACACGAGGTAAAGTAAATGTATAGCAAACAGAGCAGATCATGTTTGACAAACAGGCCTACACGTTTACCAGGTCAGTCTCTCAATGGCCAAATTAATACTGAAAGAAAAAAAGGCACTTGGTCTTTTTATCCAGACTATTGCTTCATTTGAGTGtgagaaagacagaaacagagagacagtgtaagAGAGTCCAAAAATATTAGTCCAAGTTATTACTCCAATAATAATACTAAGAATACAAATCATGACCAAAGGTAAACACTTGACAGTATTTCTGATGTATCAATAGTGCATGTTTAAGATATTGAATGTTGTGCATGTACAGCAAGTGAGTACACCACCATCTTTTTAAAAAGGAATACCACATCCATAGATCGCGTGCCTTAGGAATTATGAATCGGAACATTTTGTTGTCTTTGCATAATTGACCATATCAGTTATAACATAGTGGAAACCACATTCTTCAGTTTATGAACACTTAATTGCATCAGAGATATACAGTAGAATCGCTCCTCTCATACTGAAGAGAGGTCAGCAGAAGAACTGTCATCAGGAAACACATCCTCTTGCTGAATGGTCAGCTAAGTGGGTGAGACTAAATGTGCTTTTCTGACGTGCAAACCGACTAGCCAAATATAAAACcgacccttaccttaacccttaacccagaCCCTAACCCACATTTAAACAATTCAAAAAGTAAATATTGGTTTACACATCAGAAAATTCTCTTTAGTCTCTCCCCTCCCAAGTCAAGCTGCCCTTGCATGGTGTACAATATAAACAATAACAGTGCTAGAATGCTAGGCCTTGTCATTTCTGGGAGGGAGATACAGATAAAGTCCATGATAACCATGAGACTCTGAATCTGAGTGTTTAGCACAGAGAGGCATAGACTACCACAAGATATACGTTTGTTTTGGTACAAAGACTGAGGTTTGAACAAGATAGTTGCAGAGCCTCCAATATCGCCCTCCTTTCAAATAATACAATCTgcatgacagatttgtaccttgtcagctcggggttacCAGctcagcaaccttccggttactggcccaacgctctaaccactatgccacccccccaattcatcccaaaggtgttcgatggagttgaggtcagggctctgttcaggcctgtcaagttcttccacactgatctcgacaaaccatttctgtatggacctcactttgtgcactggggcattgtcatgctttaacaggaaagggccttccccaaactgttgccacaagttggaagcacagaatcgtctagaatgtaattgtatgctatagcgtaaatacttcccttcactggaactaaggggcctagcccgaaccatgaaaaacagccccagaccattattcctcctccatcaaacttgacagttggcattatgcatttgggaaggtagagttctcctggcatcctccaaactgagaatcgtctgtcggactgcaagatagtgaagcgtgattcaccactccagagaacacatttccaccgagtccaatggtggcaagcttcacaccactccagccgaccctTAAcactgcgcatggtgatcttaggctccgcggccacggaaacccatttaacGAAGGTCcaaacagttcttgtgcggatgttgcttccagaggcagtttggaacttggtattGAGTGGTGCAACGGGTGACaggttatttttttttacacgctACATGCttcagtggtcccgttctgtgagcttgtgtggcttaccacttcacggctgagttGTTGTTGCTCTTaggcgtttccacttcacaataacagcacttacagttgaccagggcagaaatttgacaaactgacttgttggaaaggtggcatcctatgacagtgccaggTTGGAAGTCACAGAGCTCTCCAGTAAGGCCATTCGACTGCCAATGTTTttctatggagatttcatggctgtgtgcttgattttatacacctgtcagcaacgggtgtggttgaaatagccaaatccactcatttgaaggggtgtccacatacttttgtatatatagtgtacatagtCATTGCACAAACTCCATCTGAAGGAGAACTGTAATAAAGGTCCCCTATCACAAGGGTAAAAGCTCAAAGGTGGCACTACTGTCAATGTTACCACTACTCATCAACAGTTTCATATTCAACTCCAACTGGTTCAACTTGACCAGTGAAGCAATGCCACTCAACGTCACTTTCCAGCACCTAAAGAACGTAAATTCATATACACAACATTTAACCATAAATATTTATTCACACTTAAATCCTACTCTTGGTCCATAGTATTTTTGCGATCAAGAAGATAAACCTCACCAACTCCCTACATATCTTTTAGCCTTAATCTCAACTTGCATGTTCAGTTTTGGTCTCCGGGTAGTATAGAGCAGTGCCTAGATCAGAGATGGAGGCTCAACCTTGCTCCACCTGTACTGATGAGTATGTAGGTGGCTGTGCCTGCCTGGTGAAAAAGGAAGCAGCTCTCTTCGGC
>TU1014957
gctgaataaaaaaaCGTATTGTGGGTTTAACTAAACCTAATCAGTCACTGGTTAAGTTTGGTAGTGCACATTATATAAATTACAAAGGAAAGAAAACAGTGAAGTTACAGGGTTCGATATATTTTAGTCTCTacggctgcgtttacacagGTAAAGTAAATGTATAGCAAACAGAGCAGATCATGTTTGACAAACAGGCCTACACGTTTACCAGGTCAGTCTCTCAATGGCCAAATTAATACTGAAAGAAAAAAAGGCACTTGGTCTTTTTATCCAGACTATTGCTTCATTTGAGTGtgagaaagacagaaacagagagacagtgtaagAGAGTCCAAAAATATTAGTCCAAGTTATTACTCCAATAATAATACTAAGAATACAAATCATGACCAAAGGTAAACACTTGACAGTATTTCTGATGTATCAATAGTGCATGTTTAAGATATTGAATGTTGTGCATGTACAGCAAGTGAGTACACCACCATCTTTTTAAAAAGGAATACCACATCCATAGATCGCGTGCCTTAGGAATTATGAATCGGAACATTTTGTTGTCTTTGCATAATTGACCATATCAGTTATAACATAGTGGAAACCACATTCTTCAGTTTATGAACACTTAATTGCATCAGAGATATACAGTAGAATCGCTCCTCTCATACTGAAGAGAGGTCAGCAGAAGAACTGTCATCAGGAAACACATCCTCTTGCTGAATGGTCAGCTAAGTGGGTGAGACTAAATGTGCTTTTCTGACGTGCAAACCGACTAGCCAAATATAAAACcgacccttaccttaacccttaacccagaCCCTAACCCACATTTAAACAATTCAAAAAGTAAATATTGGTTTACACATCAGAAAATTCTCTTTAGTCTCTCCCCTCCCAAGTCAAGCTGCCCTTGCATGGTGTACAATATAAACAATAACAGTGCTAGAATGCTAGGCCTTGTCATTTCTGGGAGGGAGATACAGATAAAGTCCATGATAACCATGAGACTCTGAATCTGAGTGTTTAGCACAGAGAGGCATAGACTACCACAAGATATACGTTTGTTTTGGTACAAAGACTGAGGTTTGAACAAGATAGTTGCAGAGCCTCCAATATCGCCCTCCTTTCAAATAATACAATCTgcatgacagatttgtaccttgtcagctcggggttacCAGctcagcaaccttccggttactggcccaacgctctaaccactatgccacccccccaattcatcccaaaggtgttcgatggagttgaggtcagggctctgttcaggcctgtcaagttcttccacactgatctcgacaaaccatttctgtatggacctcactttgtgcactggggcattgtcatgctttaacaggaaagggccttccccaaactgttgccacaagttggaagcacagaatcgtctagaatgtaattgtatgctatagcgtaaatacttcccttcactggaactaaggggcctagcccgaaccatgaaaaacagccccagaccattattcctcctccatcaaacttgacagttggcattatgcatttgggaaggtagagttctcctggcatcctccaaactgagaatcgtctgtcggactgcaagatagtgaagcgtgattcaccactccagagaacacatttccaccgagtccaatggtggcaagcttcacaccactccagccgaccctTAAcactgcgcatggtgatcttaggctccgcggccacggaaacccatttaacGAAGGTCcaaacagttcttgtgcggatgttgcttccagaggcagtttggaacttggtattGAGTGGTGCAACGGGTGACaggttatttttttttacacgctACATGCttcagtggtcccgttctgtgagcttgtgtggcttaccacttcacggctgagttGTTGTTGCTCTTaggcgtttccacttcacaataacagcacttacagttgaccagggcagaaatttgacaaactgacttgttggaaaggtggcatcctatgacagtgccaggTTGGAAGTCACAGAGCTCTCCAGTAAGGCCATTCGACTGCCAATGTTTttctatggagatttcatggctgtgtgcttgattttatacacctgtcagcaacgggtgtggttgaaatagccaaatccactcatttgaaggggtgtccacatacttttgtatatatagtgtacatagtCATTGCACAAACTCCATCTGAAGGAGAACTGTAATAAAGGTCCCCTATCACAAGGGTAAAAGCTCAAAGGTGGCACTACTGTCAATGTTACCACTACTCATCAACAGTTTCATATTCAACTCCAACTGGTTCAACTTGACCAGTGAAGCAATGCCACTCAACGTCACTTTCCAGCACCTAAAGAACGTAAATTCATATACACAACATTTAACCATAAATATTTATTCACACTTAAATCCTACTCTTGGTCCATAGTATTTTTGCGATCAAGAAGATAAACCTCACCAACTCCCTACATATCTTTTAGCCTTAATCTCAACTTGCATGTTCAGTTTTGGTCTCCGGGTAGTATAGAGCAGTGCCTAGATCAGAGATGGAGGCTCAACCTTGCTCCACCTGTACTGATGAGTATGTAGGTGGCTGTGCCTGCCTGGTGAAAAAGGAAGCAGCTCTCTTCGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1014956 False 2655 lncRNA 0.43 2 44301794 44304579
TU1014957 True 2652 lncRNA 0.42 2 44301794 44304579

Neighbor

gene id symbol gene type direction distance location
LOC110533999 NA coding upstream 13493 44287536 ~ 44288301 (+)
mrpl49 mrpl49 coding upstream 16254 44283818 ~ 44285540 (+)
LOC110533994 cnih2 coding upstream 32817 44259513 ~ 44268977 (+)
LOC110533985 LOC106603139 coding upstream 178024 44108333 ~ 44123770 (+)
bscl2 LOC106563482 coding upstream 200938 44097260 ~ 44100856 (+)
LOC110534002 LOC106603131 coding downstream 15660 44320239 ~ 44325686 (+)
LOC118966633 LOC106603129 coding downstream 25605 44330184 ~ 44340628 (+)
LOC110534003 LOC106603128 coding downstream 41535 44346114 ~ 44349641 (+)
LOC110534004 LOC106563461 coding downstream 46073 44350652 ~ 44377640 (+)
LOC110534006 LOC106603126 coding downstream 97196 44401775 ~ 44439475 (+)
G892132 NA non-coding upstream 31164 44270427 ~ 44270630 (+)
G892073 NA non-coding upstream 47810 44253483 ~ 44253984 (+)
G892128 NA non-coding upstream 54653 44246595 ~ 44247141 (+)
G892125 NA non-coding upstream 60207 44240697 ~ 44241587 (+)
G892114 NA non-coding upstream 61126 44228825 ~ 44240668 (+)
G892185 NA non-coding downstream 93287 44397866 ~ 44398095 (+)
G892208 NA non-coding downstream 182502 44487081 ~ 44487857 (+)
G892245 NA non-coding downstream 185071 44489650 ~ 44489949 (+)
G892187 NA non-coding downstream 297932 44602511 ~ 44603878 (+)
G892279 NA non-coding downstream 304358 44608937 ~ 44609138 (+)
LOC110533983 LOC106603147 other upstream 220384 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 361237 43938412 ~ 43940557 (+)
G891856 NA other upstream 558304 43742917 ~ 43743490 (+)
LOC110533965 LOC106603163 other upstream 560764 43732222 ~ 43741030 (+)
G891847 NA other upstream 588712 43712545 ~ 43713082 (+)
G892191 NA other downstream 350979 44655558 ~ 44659491 (+)
G892499 LOC106603104 other downstream 704255 45008834 ~ 45010849 (+)
LOC110534033 LOC106603099 other downstream 1249658 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 1317678 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 1596466 45898515 ~ 45901940 (+)

Expression


Co-expression Network