G892187


Basic Information

Item Value
gene id G892187
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44602511 ~ 44603878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1014992
tatttgagattcttcaaagtcgccaccctttgccttgatgacagctttgcacactcttggcattctctcagccagcttcatgaggtaatcacttggaatgcatttcaattaacagatgggccttgtttatttgtggaatttatttccttcgtAATGCATTTGAGGCAATCAGTTttgatgtgacaaggtaggggtggtatacagaagataacattatttggtaaaaggccaagtccatattatggcaagaacagctcaaataagcaaggagaaattacagtccatcattactttaagacatgaaggtcagtcaattctgaAAATGTtaagacatctcaacatcaactgttcagaggcgactgcttgaatcaggccttcatggtcgaattgctgcaaagaaaccactactaaaggacaccaataataagaagagacttgcttgggccaagaaacacaagcaatgaacattagactggtgagactggtgtcctttggtctgatgagtccaaacttgagatttttggttccacctGCCGTGTCTTGTGAGACTCAGTAGGTGAGTGGAGGATCTCTGCAcatgtagttcccaccgtgaagcatggaagaggaggtgtgggggtgctttgctagtgacactgtctgtcttatttagaattcaaggcacacttagccagcatggctaccacagcattctgcagcgatactaagagtgtgaaaagctgtcatcaaagccaAGATttgctactttaaagaatctcaaatataaaatatattttgatttgtttaacacttttttggtcagtACATGACcaataagtgttatttcatagtttggatgtcttcactataattatacaatgtagaaaatagtcaaactaaagaaaaacccttgaatgagtaggtgtgtcaaaactatTGACGGGtactgtacagtggggcaaaaaaagtagttctaaatacttttttgccacactgtatgTTGAAGAGGAGTGGGCAGACTGTTGAGTGTTGTACACACTGGTTGCTGGAGCTGCTAATTATCCCAGGTGTAGTTAGTTACCTGTCGTATTTTCAGTGTAGGCCTTTAATAAGTACCTAATTCGATAGGAAGACCACCAAGGAGTCCCCACTACCAACCAACCTCTCATAAATCCTGACTCTGTTAACAGAGCAGGTCAGAGCACCAAATAGAAGCCTGATTTAGTTCCGTCATGAAGCAGCTGTGTTTGAAGTGTGTTCTTCCTCAATGgtttgttctgttaggttggAGCCACCAGCTATTCTAGCACTGAGATTAGTTTCTTTACAGATGACCTCTGATCATTGAGAACTTTTGTATGTTGTTGAATGCAATAAATACAATTTGTG
>TU1014991
tgtagaaaatagtcaaactaaagaaaaacccttgaatgagtaggtgtgtcaaaactatTGACGGGtactgtacagtggggcaaaaaaagtagttctaaatacttttttgccacactgtatgTTGAAGAGGAGTGGGCAGACTGTTGAGTGTTGTACACACTGGTTGCTGGAGCTGCTAATTATCCCAGGTGTAGTTAGTTACCTGTCGTATTTTCAGTGTAGGCCTTTAATAAGTACCTAATTCGATAGGAAGACCACCAAGGAGTCCCCACTACCAACCAACCTCTCATAAATCCTGACTCTGTTAACAGAGCAGGTCAGAGCACCAAATAGAAGCCTGATTTAGTTCCGTCATGAAGCAGCTGTGTTTGAAGTGTGTTCTTCCTCAATGgtttgttctgttaggttggAGCCACCAGCTATTCTAGCACTGAGATTAGTTTCTTTACAGATGACCTCTGATCATTGAGAACTTTTGTATGTTGTTGAATGCAATAAATACAATTTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1014992 False 1368 lncRNA 0.40 1 44602511 44603878
TU1014991 True 510 lncRNA 0.41 1 44603369 44603878

Neighbor

gene id symbol gene type direction distance location
LOC110534013 LOC106603121 coding upstream 558 44574931 ~ 44601953 (+)
LOC110534011 LOC106603123 coding upstream 28641 44526662 ~ 44573870 (+)
LOC110534008 LOC106603125 coding upstream 98957 44494158 ~ 44503554 (+)
LOC110533118 LOC106563456 coding upstream 123367 44477086 ~ 44479144 (+)
LOC110534009 NA coding upstream 125236 44467605 ~ 44477275 (+)
LOC110534014 LOC106603122 coding downstream 9966 44613844 ~ 44622676 (+)
LOC110534018 LOC106603117 coding downstream 161353 44765231 ~ 44767832 (+)
LOC110534023 LOC106603103 coding downstream 389408 44993286 ~ 45003089 (+)
LOC110534027 LOC106603105 coding downstream 436883 45040761 ~ 45124746 (+)
LOC100135968 LOC100135968 coding downstream 521674 45125552 ~ 45149685 (+)
G892245 NA non-coding upstream 112562 44489650 ~ 44489949 (+)
G892208 NA non-coding upstream 114654 44487081 ~ 44487857 (+)
G892185 NA non-coding upstream 204416 44397866 ~ 44398095 (+)
G892157 NA non-coding upstream 297932 44301794 ~ 44304579 (+)
G892132 NA non-coding upstream 331881 44270427 ~ 44270630 (+)
G892279 NA non-coding downstream 5059 44608937 ~ 44609138 (+)
G892281 NA non-coding downstream 6180 44610058 ~ 44610311 (+)
G892283 NA non-coding downstream 12247 44616125 ~ 44616340 (+)
G892284 NA non-coding downstream 13846 44617724 ~ 44617966 (+)
G892286 NA non-coding downstream 25401 44629279 ~ 44630603 (+)
LOC110533983 LOC106603147 other upstream 521101 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 661954 43938412 ~ 43940557 (+)
G891856 NA other upstream 859021 43742917 ~ 43743490 (+)
LOC110533965 LOC106603163 other upstream 861481 43732222 ~ 43741030 (+)
G891847 NA other upstream 889429 43712545 ~ 43713082 (+)
G892191 NA other downstream 51680 44655558 ~ 44659491 (+)
G892499 LOC106603104 other downstream 404956 45008834 ~ 45010849 (+)
LOC110534033 LOC106603099 other downstream 950359 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 1018379 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 1297167 45898515 ~ 45901940 (+)

Expression


Co-expression Network