G893356 (LOC100194703)


Basic Information

Item Value
gene id G893356
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44621421 ~ 44623804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1016283
aacttctgggccacatcctgactgatggcagcccattcttgcataattaatgcttggagtttgtcagaatttgtgagtttttgtttgtccatccgcctcttgaggattgaccacaagttctcaatgggattaaggtctggggagtttcctgaccatggacccaaaataccAATGTTTTGTTACCCGTGCCACTCACTTTTGCctcatggcaaggtgctccatcatgctggaaaaggcattgttcgtcaccaaactgttcctggatggttgggagaagttgctctcggaggatgtgttggtaccattctttattcatggctgtgttcttaggcaaaattgtgagtgaacccactcccttggctgagaagcaaccccacacatgaatggtttcAGGATGCTTttctgttggcatgacacaggactgatggtagcgctcaccttctccagacaagcttttttttccggatgccacaaacaatcggaaaggggattcatcagagaaaatgactttacctcaGTCCTaaccctgtaccttttgcagaatatcagtctgtccctgacgtttttcctggagagaagtggcttctttgctgcccttcttgacaccaggccatcctctaaaagtctttgcctcactgtgcgtgcagatgcactcacacctgcctgctgccattcctgagcaagctctgtactggtggttccacaatcccgcagctgaatcaactttaggagatggtcctggcgcttgctggactttcttgggcgccctgaagccttcttcacaacaattgaaccactctccttgaagttcttgatctgataaatggttgatttaggtgcaatcttactggcagcaatatccttgccaaTGAAGCCTTTAttctgcaaagcaatgatgacagcacgtgtttccttgcaggtaaccatggttgacagaggaagaacaatgattccaagcaccaccctccttttgaagcttccagtcttattcaaactcaatcagcatgacagagtgatctccagccttgtccttgtcaacaatCACACCTGAGTTAACGAgtgaatcactgacatgatgtcagctggtccttttgtggcagggatgaaatgcaatggaaacgttttgggggggggggattcagttcattttcaTAGCAAAAGAGGGACTTTGCatttaattgcaattcatctgatcactcttcataacattctggagtatatgcaaattgccattatacaaactgaggcagcagacattgtgaaaattaatatttgtgtaattttcaaaacttttggccacgactgtatacctACGGTCAGCATTTTACCAACAATAGTTACATATTCCATTGGTAGGCAACACAGGTCCTAGAGAGCTGCACTAGTCCTGAACCCGACCCCTTGTTATGTGTTGGGAAATGGCTACTGAACACAGGACTTTGTTTCCCTTCCCATACCGGCTCAGAAGTCTCATCCCACCCTGCTCTAACCTGCTCCACTGGGGCCTCACGTGACTGTCATGATCTACACTCCCCTTCAGTTATAGCCACAGGAGGGCAGTAATGAGCAATACAAGTGCTACTGGGACTGTCAGGGGGATAATGTTATTGGAATGATGGGGAGCCATCAGAGGATCTAGTCAGACAGTTGTGTGTTAACACAAACTACAGACTGGTATGTGCACTTGCATTTGCTATACTGTAGCATTTTCCTTAGAGGAAAATGTATTGACATTGTCATATATAGGTCTACATTTATATAATTTGTAAGATGGGCACAAAGGGATTCTAAGGTGAACCTTAAAGGCACATTTCTGAATCAATTGCATGTCTGAGTTGTTTGTCTCATGGAAAGGGAACATTGTAttttctctctgctcttctcccccAAAGCTGGGCACAATGCTCTCCACAGGTCTGGCACACAAATTACACTATTTACAATTAGCGAAGATGTTTTTACCTTAACTAGTGACAGTAAAAAACACAGGATACATTGGCAGACATGGTATAAAAAAAAAGGCAAAACAGGCAAGCAAGTGCATGATAATGTGTGCTAATGGTATGCTCCGATTTGAATTGATCAAAGTGTAAGGAAGTTGTGTAATATAATTTAGCTATACTATCATGTTATATCAATAGCCAACTAACAAATACTAAAGCGTTAAACAAGTATTTCTCATGACACTTTTTGGGGTGTTTGTTTAGAGGCGGTTTCCAGGAACGGAACGGTTTTCGTTTTGCCGTCATATTCAGCAATGAAATTGATTCAGTTGATGTAGAACAGTTTTGGGACTTTATTTGAGTTGTGAATGAATATTGCCTTTATGGTAGAAGGTTTtatcttttttttccccccatgaaaataaaatatttgtcACTGGC

Function

NR:

description
transposase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1016283 True 2384 lncRNA 0.43 1 44621421 44623804

Neighbor

gene id symbol gene type direction distance location
LOC110534010 NA coding downstream 108123 44511489 ~ 44513298 (-)
LOC110534001 LOC106603132 coding downstream 301862 44312153 ~ 44319559 (-)
LOC110534000 frmd8 coding downstream 312443 44303605 ~ 44308978 (-)
LOC110533996 LOC106603134 coding downstream 319765 44294538 ~ 44301656 (-)
tm7sf2 tm7sf2 coding downstream 327176 44288348 ~ 44294245 (-)
LOC110534015 LOC106603119 coding upstream 2118 44625922 ~ 44636337 (-)
LOC110534016 LOC106603120 coding upstream 16441 44640245 ~ 44648066 (-)
LOC110534017 LOC106603118 coding upstream 31740 44655544 ~ 44751420 (-)
LOC110534019 LOC106603116 coding upstream 151564 44775368 ~ 44812908 (-)
LOC110534021 LOC106603115 coding upstream 194706 44818510 ~ 44821307 (-)
G893469 NA non-coding downstream 2836 44618332 ~ 44618585 (-)
G893466 NA non-coding downstream 5224 44615933 ~ 44616197 (-)
G893463 NA non-coding downstream 11782 44609430 ~ 44609639 (-)
G893462 NA non-coding downstream 12815 44608395 ~ 44608606 (-)
G893358 NA non-coding downstream 17552 44602525 ~ 44603869 (-)
G893357 NA non-coding upstream 13970 44637774 ~ 44639126 (-)
G893477 NA non-coding upstream 31009 44654813 ~ 44655034 (-)
G893497 NA non-coding upstream 92494 44716298 ~ 44716554 (-)
G893508 NA non-coding upstream 330376 44954180 ~ 44959512 (-)
LOC110533117 stx5 other downstream 412157 44199178 ~ 44209264 (-)
G892965 NA other downstream 910452 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 937501 43681449 ~ 43686604 (-)
LOC110533954 LOC106603192 other downstream 1373786 43183815 ~ 43248006 (-)
G893541 NA other upstream 144646 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 387525 45011329 ~ 45017446 (-)
LOC110534046 LOC107567170 other upstream 1123511 45747090 ~ 45751405 (-)
G894917 NA other upstream 1293475 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 2607000 47203241 ~ 47234608 (-)

Expression


Co-expression Network