G892293


Basic Information

Item Value
gene id G892293
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44637764 ~ 44639136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1015101
ACCATAATATTGCATTTATTCAATTACAGCTTGTAATCAATTTTGTGACGCCAGTAAATAATTTGTCCCAGTACGTAAAATACGCCAATTGATAGCAGCATGATAAGTCATCATCAAACACATAATTATTGTGCAAAAATGGTAGATCAGCAAAGGTTATGATGTAAGAGACATCTACAAAACTTTGATAAGTTTGGTGCCTATAGTTCCCTGCGTGTAGCCTCATATCTGGTGATTCCGATATGTGTTTGGTTCTGTATGCTGCAATCCCTTTCTAAAACAACCAACAGCTACTTGGAGGTCAGGACAAGTAGATAGATACAATGTGAAACATGCCAAAATAACTTGAGTTCAATTATCGTAGGAGGCATAGCATATTTCacagcttaaaaaaaaaaaaggaagacCAAAGTATGTTCACATAGTCGCATACTGTACACGACGACTTCAACTAGATTGTAAAAGCCAGTGAAGGTTATTAATGTCAACATTAGTCCATCAGTCTTTCACGATGCAGGAGAGGCTGGTGTACTGTACTGAGGAGTTGGCTGCATATCTGTCAGCAGAGCTCCAGAGTAAACAGACACAGTCTTACGTAACACCGTCCTGGCCTGGCCACAGTCAGCAGGACAGCTCCAGTATCTGGACCAGGCTCGGGCTACGAACAGACTGTGATGCAGTACATCTTAtcacatcctctctccctctctctctgagttgAAGCATATGTCTACTAATACAGTCCTCTTCCCAAAATGTCAGCTATGGAGTCTTTTCCAGCTGATTTAGAAATCACATAAACCATGCAAAGGGTGGATTTTATGGAATGAGAACATTATATGTTGATAGATATGGCCTGATCCAAAAGTAAACATAGAAATTAGAGCAGTTTAAAAGCTGTAATTCATGGAACAATGCTGGAACTATGCTGTTACAATGCTTGCCAACAGGTTTAGTTGTAAATGTCAACATTTTATTGTGCAGGAAAAGGTTTATAGTGCTTTAGTGAGTTTGTCAAAGTATCAAGAAATGTAATCTGAGACTATAATGATATTGTTAAGCGTTAGGCTCAAATGTAGTCTGTTTTCCTACAATATGGTATATCTTGGTATAATGTGTTAACGGGGAATCCAACGTTTTGTGCCATTGGTCCATCCTCAAGATAAACCTAACCATCATTGGTCCACCGTTATCAAATAACCAATGTatgttctatattatattatctaTCATCCAGAATATTTTCTACAATGTTAAAGTGAATCCTTGCACCTCTGGGTGCAAGTAATCATGCATTTATTGTTgggtttgtgaagaatcaaaaaatatatatatacagttccaatgaaaagttgacacacctactcattcaa
>TU1015102
ACCATAATATTGCATTTATTCAATTACAGCTTGTAATCAATTTTGTGACGCCAGTAAATAATTTGTCCCAGTACGTAAAATACGCCAATTGATAGCAGCATGATAAGTCATCATCAAACACATAATTATTGTGCAAAAATGGTAGATCAGCAAAGGTTATGATGTAAGAGACATCTACAAAACTTTGATAAGTTTGGTGCCTATAGTTCCCTGCGTGTAGCCTCATATCTGGTGATTCCGATATGTGTTTGGTTCTGTATGCTGCAATCCCTTTCTAAAACAACCAACAGCTACTTGGAGGTCAGGACAAGTAGATAGATACAATGTGAAACATGCCAAAATAACTTGAGTTCAATTATCGTAGGAGGCATAGCATATTTCacagcttaaaaaaaaaaaaggaagacCAAAGTATGTTCACATAGTCGCATACTGTACACGACGACTTCAACTAGATTGTAAAAGCCAGTGAAGGTTATTAATGTCAACATTAGTCCATCAGTCTTTCACGATGCAGGAGAGGCTGGTGTACTGTACTGAGGAGTTGGCTGCATATCTGTCAGCAGAGCTCCAGAGTAAACAGACACAGTCTTACGTAACACCGTCCTGGCCTGGCCACAGTCAGCAGGACAGCTCCAGTATCTGGACCAGGCTCGGGCTACGAACAGACTGTGATGCAGTACATCTTAtcacatcctctctccctctctctctgagttgAAGCATATGTCTACTAATACAGTCCTCTTCCCAAAATGTCAGCTATGGAGTCTTTTCCAGCTGATTTAGAAATCACATAAACCATGCAAAGGGTGGATTTTATGGAATGAGAACATTATATGTTGATAGATATGGCCTGATCCAAAAGTAAACATAGAAATTAGAGCAGTTTAAAAGCTGTAATTCATGGAACAATGCTGGAACTATGCTGTTACAATGCTTGCCAACAGGTTTAGTTGTAAATGTCAACATTTTATTGTGCAGGAAAAGGTTTATAGTGCTTTAGTGAGTTTGTCAAAGTATCAAGAAATGTAATCTGAGACTATAATGATATTGTTAAGCGTTAGGCTCAAATGTAGTCTGTTTTCCTACAATATGGTATATCTTGGTATAATGTGTTAACGGGGAATCCAACGTTTTGTGCCATTGGTCCATCCTCAAGATAAACCTAACCATCATTGGTCCACCGTTATCAAATAACCAATGTatgttctatattatattatctaTCATCCAGAATATTTTCTACAATGTTAAAGTGAATCCTTGCACCTCTGGGTGCAAGTAATCATGCATTTATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1015101 False 1373 lncRNA 0.38 1 44637764 44639136
TU1015102 True 1302 lncRNA 0.38 1 44637764 44639065

Neighbor

gene id symbol gene type direction distance location
LOC110534014 LOC106603122 coding upstream 15088 44613844 ~ 44622676 (+)
LOC110534013 LOC106603121 coding upstream 35811 44574931 ~ 44601953 (+)
LOC110534011 LOC106603123 coding upstream 63894 44526662 ~ 44573870 (+)
LOC110534008 LOC106603125 coding upstream 134210 44494158 ~ 44503554 (+)
LOC110533118 LOC106563456 coding upstream 158620 44477086 ~ 44479144 (+)
LOC110534018 LOC106603117 coding downstream 126095 44765231 ~ 44767832 (+)
LOC110534023 LOC106603103 coding downstream 354150 44993286 ~ 45003089 (+)
LOC110534027 LOC106603105 coding downstream 401625 45040761 ~ 45124746 (+)
LOC100135968 LOC100135968 coding downstream 486416 45125552 ~ 45149685 (+)
LOC110534924 NA coding downstream 515276 45154412 ~ 45155664 (+)
G892286 NA non-coding upstream 7161 44629279 ~ 44630603 (+)
G892284 NA non-coding upstream 19798 44617724 ~ 44617966 (+)
G892283 NA non-coding upstream 21424 44616125 ~ 44616340 (+)
G892281 NA non-coding upstream 27453 44610058 ~ 44610311 (+)
G892279 NA non-coding upstream 28626 44608937 ~ 44609138 (+)
G892210 NA non-coding downstream 22930 44662066 ~ 44662371 (+)
G892198 NA non-coding downstream 24560 44663696 ~ 44663924 (+)
G892192 NA non-coding downstream 25126 44664262 ~ 44664623 (+)
G892200 LOC106603118 non-coding downstream 27411 44666547 ~ 44666818 (+)
G892203 LOC106603118 non-coding downstream 27974 44667110 ~ 44667324 (+)
LOC110533983 LOC106603147 other upstream 556354 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 697207 43938412 ~ 43940557 (+)
G891856 NA other upstream 894274 43742917 ~ 43743490 (+)
LOC110533965 LOC106603163 other upstream 896734 43732222 ~ 43741030 (+)
G891847 NA other upstream 924682 43712545 ~ 43713082 (+)
G892191 NA other downstream 16422 44655558 ~ 44659491 (+)
G892499 LOC106603104 other downstream 369698 45008834 ~ 45010849 (+)
LOC110534033 LOC106603099 other downstream 915101 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 983121 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 1261909 45898515 ~ 45901940 (+)

Expression


Co-expression Network