G893357


Basic Information

Item Value
gene id G893357
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44637774 ~ 44639126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1016285
aggtgtgtcaacttttcattggaactgtatatatatattttttgattcttcacaaacccAACAATAAATGCATGATTACTTGCACCCAGAGGTGCAAGGATTCACTTTAACATTGTAGAAAATATTCTGGATGAtagataatataatatagaacatACATTGGTTATTTGATAACGGTGGACCAATGATGGTTAGGTTTATCTTGAGGATGGACCAATGGCACAAAACGTTGGATTCCCCGTTAACACATTATACCAAGATATACCATATTGTAGGAAAACAGACTACATTTGAGCCTAACGCTTAACAATATCATTATAGTCTCAGATTACATTTCTTGATACTTTGACAAACTCACTAAAGCACTATAAACCTTTTCCTGCACAATAAAATGTTGACATTTACAACTAAACCTGTTGGCAAGCATTGTAACAGCATAGTTCCAGCATTGTTCCATGAATTACAGCTTTTAAACTGCTCTAATTTCTATGTTTACTTTTGGATCAGGCCATATCTATCAACATATAATGTTCTCATTCCATAAAATCCACCCTTTGCATGGTTTATGTGATTTCTAAATCAGCTGGAAAAGACTCCATAGCTGACATTTTGGGAAGAGGACTGTATTAGTAGACATATGCTTcaactcagagagagagggagagaggatgtgaTAAGATGTACTGCATCACAGTCTGTTCGTAGCCCGAGCCTGGTCCAGATACTGGAGCTGTCCTGCTGACTGTGGCCAGGCCAGGACGGTGTTACGTAAGACTGTGTCTGTTTACTCTGGAGCTCTGCTGACAGATATGCAGCCAACTCCTCAGTACAGTACACCAGCCTCTCCTGCATCGTGAAAGACTGATGGACTAATGTTGACATTAATAACCTTCACTGGCTTTTACAATCTAGTTGAAGTCGTCGTGTACAGTATGCGACTATGTGAACATACTTTGgtcttccttttttttttttaagctgtGAAATATGCTATGCCTCCTACGATAATTGAACTCAAGTTATTTTGGCATGTTTCACATTGTATCTATCTACTTGTCCTGACCTCCAAGTAGCTGTTGGTTGTTTTAGAAAGGGATTGCAGCATACAGAACCAAACACATATCGGAATCACCAGATATGAGGCTACACGCAGGGAACTATAGGCACCAAACTTATCAAAGTTTTGTAGATGTCTCTTACATCATAACCTTTGCTGATCTACCATTTTTGCACAATAATTATGTGTTTGATGATGACTTATCATGCTGCTATCAATTGGCGTATTTTACGTACTGGGACAAATTATTTACTGGCGTCACAAAATTGATTACAAGCTGTAATTGAATAAATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1016285 True 1353 lncRNA 0.38 1 44637774 44639126

Neighbor

gene id symbol gene type direction distance location
LOC110534015 LOC106603119 coding downstream 1437 44625922 ~ 44636337 (-)
LOC110534010 NA coding downstream 124476 44511489 ~ 44513298 (-)
LOC110534001 LOC106603132 coding downstream 318215 44312153 ~ 44319559 (-)
LOC110534000 frmd8 coding downstream 328796 44303605 ~ 44308978 (-)
LOC110533996 LOC106603134 coding downstream 336118 44294538 ~ 44301656 (-)
LOC110534016 LOC106603120 coding upstream 1119 44640245 ~ 44648066 (-)
LOC110534017 LOC106603118 coding upstream 16418 44655544 ~ 44751420 (-)
LOC110534019 LOC106603116 coding upstream 136242 44775368 ~ 44812908 (-)
LOC110534021 LOC106603115 coding upstream 179384 44818510 ~ 44821307 (-)
LOC118936697 NA coding upstream 201586 44840712 ~ 44843123 (-)
G893356 LOC100194703 non-coding downstream 13970 44621421 ~ 44623804 (-)
G893469 NA non-coding downstream 19189 44618332 ~ 44618585 (-)
G893466 NA non-coding downstream 21577 44615933 ~ 44616197 (-)
G893463 NA non-coding downstream 28135 44609430 ~ 44609639 (-)
G893462 NA non-coding downstream 29168 44608395 ~ 44608606 (-)
G893477 NA non-coding upstream 15687 44654813 ~ 44655034 (-)
G893497 NA non-coding upstream 77172 44716298 ~ 44716554 (-)
G893508 NA non-coding upstream 315054 44954180 ~ 44959512 (-)
G893782 NA non-coding upstream 554003 45193129 ~ 45280890 (-)
LOC110533117 stx5 other downstream 428510 44199178 ~ 44209264 (-)
G892965 NA other downstream 926805 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 953854 43681449 ~ 43686604 (-)
LOC110533954 LOC106603192 other downstream 1390139 43183815 ~ 43248006 (-)
G893541 NA other upstream 129324 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 372203 45011329 ~ 45017446 (-)
LOC110534046 LOC107567170 other upstream 1108189 45747090 ~ 45751405 (-)
G894917 NA other upstream 1278153 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 2591678 47203241 ~ 47234608 (-)

Expression


Co-expression Network