G893781


Basic Information

Item Value
gene id G893781
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45274474 ~ 45278522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1016765
GATGTcctcgctattattctacaatgtaaaaaatagttaaaaaaaataaagaaaaacccttgaatgagtaggtgtgtccgaacattttacttgtactgtatgttgagaGTGTGCGCATGATTGCATAAGGTAGTTGACCATCTCTCTGCGGGTGTGCTGGGGTTTATGAGGACCAATTGGTTTTTGCACCAAGTTAGAGGAATGCCTGAGTTATATATACAGTAACTGTAGGATGTCATATCCAAGTGGATGAATTACATGCATCTGAATTGAATAGTGTAAGGTACACAGTTATTGTGGACGTATTTAGCTTGTACAGGTGGTTAAGTACATGTGTTGATAAATGTTTTTTCTTATGATTGTCTTACTGCAGTTTTAGGGCTCTATTTCAATCCGTATGGcggaagttcagctttacagcgtgattgaaatttaaaggcaatggtcCCGCGttcgcggagactgcattcacggtgaACGCAAATCGGTAACTCCTCAGCGATCCAGACATAAAAGAGCCCTTAGTTGCACTTGCATTCAAATCTTGGTAAATCATGACTAACATTTAAGATATACTGTAGTAAATTATATGATGGATTTAGACACCTTTTGTCTGTCTATAGATGTTTTTACTACTTGAAAATCATTGACATGCTATTCTGTCTTTATGACTTGTCTTGGACACATGCTCTTTGGTGAGACAGAATGTCTTCCAGACGTCTGGTTAGGTTTTACCAGAGGAAACAGTACAGAACAGCAGTAGCAGTGGTTCAGTGCTTGGCAGTAGCTTCGGCAGGTCTACTAAAGTGCCACTGTCTCAGCTGCATTGAAAGCAGTGTAAACGTGGGGAGCAGTCCCCAGTTGTGTACAGTGCAATTCATTTCCCAGACACCccctgtttaaactggagattaACGTTTACTGTTGAGAGAGACTCCCGGTTACCATGGTGATTGAGACGGCCAAAATGGTGATCATGAACAGAATAGTAATACCATGCTTTTCACACAGCGTCTGCTCTTTTCTACCTCTTAACGTCTCATCCAGACTTCCCCCTACCATGAACACACATGCGCAAACACGCATgcacacacagaataaaaCACACTCACATGGACACTGTCAAATACATCCCCAAAACCTGTACCAAGGGACATAGGTATAGGATAGGGCTTGTATTGTGTTACCATGGTAACGTATCGCAGTTGTTTCCCTTGCTATTTTTAAAGGGTGATATGATTACTTAAAATCCCTTTCTAAATTCACCGACGGTTGCAACACAGACCACGCCTAGTAATGATCAAAAACAGACTGGAGATGGACTGTGATTGTGACTTCATCATGATGAGATTCATGGATGTGAATATGGAttggtactgtgtgtatgtatggcaAGTGGTGTGGCTAAAACAATGAGACAGAAATGTAAAATTGTGTTGCTCAGTTAAGACTGAGCGAACAGCCATCATTTGAGTACAGCCAGAACGGGAGGTGGAACACAACGCTTTTAATTGCAAAAGGGAATTGGTTAATACATAGAGTGAAGCACTGAAACAAGCCACTGTGACATTGCAAAAAACACCATTAAAGAGGACGTTGTACATTTCCCAGTAACCCAATTCATTCCATCAAGAGATTCAttcagagagaacagaaagagagtaTGTCTGCACTATGATATAGTTACCCTGGCATTCTATCAAAAACAATGTATGAGAGATCACACTGCGCTGATGGCAGCTCCACAATTCAAGACATTTAAAAATGCTCTACAAACAGTTTGTTAACAAAGAGGCCATGTCTTAgttttcctgtttgttttgtttttttttatcatttttttttatttatcaaaaGACGGCAATCAAAAAAAAAGAGGCACCACTGGAGGTGAGAGTTTGGCCCACAGCTCCTGTATTAtagggtggtggcagcatcacacaAAACAACCGACTGACACTGTTCATGTTAAACTGTAGAAAATCTGGGGCAAAGAGACAAGATATTGAACAGCTGGTGAGATAAAGTAGAACTGAATTCTCCAGAAGAGACTTTTATTTGACAAAGTGTTGATTCCCAGAAGATGTAAAAGTGGACATGCAGCTGTAGTGCTGACatcacagtgacatcactccctGCAGATGGCGGGTGTAAGTAGTCGAGAGTGTGTTGTGCTGCTCATTTGGGTCAGATTTGGGTCAGGTCCAGAGAGAGGTTCACACTGGATCACTTTACAGACGTAAATACCTTACATACGTAATACTTGGTCTAGTATTTCACACTATTCTTTGGGACGACCGTCACAGAAAAATGTCCATATGCCTGCACTATAACACAATGATGTGTTAATCAGATTTCGCCAGACATCCTCTCTAGGAACATGACGTTACTATAACCATTCATGTGTGACTCGTCAAGAAAAGGAACAATGTTTTAGACATATATAttacttcatttttttttttaataatactttttttttcttcgaACAAACAATTCAATTTCCTCCTATCTAAACTTTTGTATTCAACCAATAAGCACTAAGAAAAAAAGATTTAGCCATGCAAAATGTGAGAAGCTCTACTCTATTGTTTTCTGTGCTGGTGAAAATCTATTTACCCTACATGGACATGGTCTGGTTAGAATGGTCTCATGGGAGGCCCCAGTAACAAACAGACAGTACAGAGTACAATAGCAGACAGGTATGTCTCCACTGGGGGAACTACAGATGATCTACATTTTAGATTTCTACTTTGCTTGATACAATATATACTTTGGCTTTGACCTCTTGTTTTATTGTCAGGATCATTTATTCTAAACTTGCCTCAATATAAGTACACCTGGCTGTATCACATCTCCATTGTATAATCAGTCACAAAAAGGAGTTCAAATAATCATCACCAAAATACATTTAAGAATCCTAAACcgttatttaatttaaaaaaatggacgtgcttgtttgttttttaaaaggGCAATTTTTTTTTTCTGGCTTTGGTTGGTTTGTACACACTAGTATAACTTACCCCAGTAACCCTACTCTACATGCCCACGGTTTCAAAGCCGCTTGGCTCCACTGTGCCTTGCAGTTTTTGAAGACCTCATAGATAGACGATGCACAGAAAACATGTTATGTTGACTCAACGTTTGGCAGGCGATGTATTGACGTTTTGTGAAAGCATAGTTATGAATGTTAGGCATTAGCTGGGATGTTGCAATGGCTATACACAGTATTTACAGTAGATGAAAAGGAGGACATTCACCTCTCACGGCTAAAGCGCCTTCCCCTAAAAATGTTCTCATTACTTTTAACAGCTTGAACCAtagcacagaaagagagaggacaaagagggaCATTATGAGCAAAACGTGACTACTGACTACTACACCCCAGAGAAATAGTCCATTTGCTGCTTGGAATTGTGCACTTGAATTGGGAAAATCGTAGAAATGTGTGATTTGCCCTATATCAGAATGCATGGTTTTCAACTGGGAAAAAAAGACACTTTTGTAGTTACATTGTGGGAACTGCATCTTTGAAATTGCTTGTTAGTAAATGATGTGCCCCTTCTGAGAGCATAAGAGTAAAccctggactttcacacaatagaAGGATTTGGCGAATTTGTTAAGATGCAGTAATTCGTACATCATTGTCGTATACGCCCAGCATATACATTCTTAACAACATAGGATATAAAAAACAAGATCTAGTGGTGAATTCTCAAGCAGCAAAAGGTGGAACAGCCGTGGTGGCCAAGGCCAGGTAGACATAGCACGTGGCACCAGGGAGAGATCAAATGGAGAAGTCCTCCCGGATAGTACACTAGAGGACGCTGGCCGTCAGTGAAGGTGGAGAGCACCAGAGATACCTCCGAGTGGCAGGCCAGTGGGAGACGGGTAGGCAGGCAGCAGCTGACAGACAGGAGGCTCTACATGGATTCCCCAAGAGAATCATCATCATCCAGAGATAGGGGCAGGTAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1016765 True 3987 lncRNA 0.40 2 45274474 45278522

Neighbor

gene id symbol gene type direction distance location
LOC110534028 LOC106603112 coding downstream 93311 45165618 ~ 45181163 (-)
LOC110534025 LOC106603111 coding downstream 257028 45011329 ~ 45017446 (-)
LOC110534024 LOC106603104 coding downstream 263527 45003241 ~ 45010947 (-)
LOC110533119 LOC106603113 coding downstream 296218 44878607 ~ 44978256 (-)
LOC110534031 LOC106603108 coding upstream 48789 45327311 ~ 45381903 (-)
LOC110534045 psmb6 coding upstream 337352 45615874 ~ 45629020 (-)
pold3 pold3 coding upstream 406733 45685255 ~ 45697214 (-)
LOC110534047 NA coding upstream 421767 45700289 ~ 45702447 (-)
wdr73 LOC106603095 coding upstream 429635 45708157 ~ 45710654 (-)
G893822 NA non-coding downstream 10990 45262143 ~ 45263484 (-)
G893508 NA non-coding downstream 314962 44954180 ~ 44959512 (-)
G893497 NA non-coding downstream 557920 44716298 ~ 44716554 (-)
LOC110534017 LOC106603118 non-coding downstream 616672 44655544 ~ 44751420 (-)
G893477 NA non-coding downstream 619440 44654813 ~ 44655034 (-)
G893834 NA non-coding upstream 9630 45288152 ~ 45288513 (-)
G893809 NA non-coding upstream 45444 45323966 ~ 45326807 (-)
G893882 NA non-coding upstream 109285 45387807 ~ 45388036 (-)
G893885 NA non-coding upstream 110522 45389044 ~ 45389258 (-)
G894636 NA non-coding upstream 166943 45445465 ~ 45445714 (-)
G893541 NA other downstream 505402 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 965541 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 1065210 44199178 ~ 44209264 (-)
G892965 NA other downstream 1563505 43710485 ~ 43710969 (-)
LOC110534046 LOC107567170 other upstream 468793 45747090 ~ 45751405 (-)
G894917 NA other upstream 638757 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 1952282 47203241 ~ 47234608 (-)
G896841 NA other upstream 2709239 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 3603205 48881449 ~ 48907973 (-)

Expression


Co-expression Network