G893809



Basic Information


Item Value
gene id G893809
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45323966 ~ 45326807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1016794
ggtgtgtgtgtttgttttccaAGCCATTTGGCTTACTCCAGGACATAGCTGTCATTCCTTGGATACCCTAAACTTCCTAGATGTTCAGAGATCTGACATAGAGAATGGCTGGGCCAAGGCTGTAGTGGAGGCTGATTCAATCACTACTGCCTCTCGGATGGGCCACAGAGTGTTCACGTTTCCAAAGTCAAAAGCTTTGAAAACGTTTTCCAATTCTTCAAGTTCAAGTATGAAACCCATGTTATGGACTTACTACCTGTAGTTAGTTAAAATCAATTTAGTAAATTAATGTATTTGTAATTGTTTGTCCAGAGTCAATTTCCAATCAGAGATTCTGAGACGCGTGGTCCGTTAGAACGATTCTGAAGGTGTCACAATCTATTGCAGGACACTAGACTGGACAGGACAGACTAGACTGGACAGACTAGACAGGACAGactagactggagagactggacaGACTAGACAGGACAGACTAGACTGGACAGACTAGACTGGACAGATTAGACTGTATTAGTGTCTATGTGGGGATAGCctgccaacaaaaaaaaaatatttttcagtTTGCCAATGTTACCATTTGTTTCACATCAGTGAGCCTTACTTTTGCTTTAACCTCTGATCTGTGAATTTACCTAAATGTATCTGAAGCAGAAGCCATTTGTTCAAATGAGCACAATCCCTGAGTTAGTGCACatgttcatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctgtctgtctgtctgtctgtctgtctctctgtttgtctgtaggtctctctctctctgtctgtctgtctgtctgtctctctgtctgtctctctgtctgtctgtctgtttgtctgtcggtctctctctctctttctctctgtctttgtccatCCATGAGGAGTGTATATATAGTTTTTTTAATGGGATGCCGTTCTTTAGCTTCCTCAGCGTGAGTTAAGACTCATTACTCCAGTGTCTTGTCGCAGCTAAACTTTCCTAAGTACTGTGTGAGTTTAGTTGTATCTGTTTCTATGCGTTTCTGTGAGTTTTTGCTGTGTGGCCGCAGATTGGTGGGTGTTAGTTAATCATTTGTCCATGAAAATGTTTTTGGATTGATGACTGAGTGCCATTGTATAATTGTAACCTGTCTTACGGACCATTTAAAACAAGAGGATTACATTCCCCTTCACTCTGCCATTCCTACCATCCCATAGCAGAGGCTACTGGACAAGTACTCTGAAAAGCTCTCTCTCTACATAAATATAGACTGTTTCTTGATTCTTAATTCAATAGCTTACTTATAACCATCCCTGTGACATTCTCTGCCTGTTCCATAGTAGCCACAGTTTCCCTTAGGACTGTACTGAAGTCCAGACCTGGGACAGAGAGAGTATGAGACAGGATAGACACTTGTCCTTGTGTTGTGTCTATATCCCTggtagatttttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagatgaatgggagTGTATGCATGAGTGgctgtgtgtacacgtgtgtgtgtgagcacatgtgtgtgtttgtaagcgAGAGAGCTACCTCAGCACTAGATGCCACTCCTGTTGTCCACCTTGTCCACCTAACTCAGACGGTGAGGTGCAGGGTAGCTGCTCACTCGTACCACCACTGTAGGCTATACGTACTGTAGAAATGCAGGAGAGCCATTGCAAGGAGGACATGGCCGATTTCATGCATGGGAAGCAACACATGTTAATTCATTTTCCAAGTAGGCTAACATTGTTagaatatgtgtgtatgtatgtaaataagATGGAAAAAATGCAATGACAATATTCAGGTTGCTCTATAGTAGGCCTATGTATTTGTAAATGGTTTGCACCCTGGAAATTGAACATGAAAATAAACATTGTCTAAACACTCCTGGATGGAACAATCCTGCTTGGGTTGTGTCAGACAGTACTCCACCTGGACACAGAGCCATTGGAAgcagtcctgtctgtctccaacacgCCCATGGAGCCTGTCTGTCAGTCCGGAGCATGACTGCTGAGTGTGCCTGTGGCTGAGAGTATCAGGGACCTCACAGAGACAATCTGCCCTGTGACCTTTGGTCTCACCTATGTACCTGAACTATGAGCACAAAGATGAACTCTGGGACAGCTAGCGGCAACCCCGGCCTGCCCCACCCCGCCCCGCCGGTCCGCTCCTCTTCTGCGGTCGCACCTGTACATTCCTCTCTTTTGAATGTGTAAACCTGTACACGTGGTGTGAAAATTCCTCTATAAATGTGTATCAAGAGAATGGAACAAAGACAAAAAAGCGTTTCTTTTTAAATTATTCCTATTATTATTCTACTATTGTCATCATGTGGGTTTGTTAACCGCTGATCCGTCTGGTAAACCTCAGCAGGCCCCCATCTTTGGAAACAGACAGATGAGAAAAAGCGACAGGGGAAAACTAAGGTTTCGGATAAGCTATTTTTAATTGTTAAAGCTATAGACTTTTTTAAATTATGAATTGTGCATGGCTGTGTCTTGAGTGTAAAACAAGAAAATACTGCAGTTTGGGAACTGGActgaaataaaatgaaaaaatg
>TU1016797
ggtgtgtgtgtttgttttccaAGCCATTTGGCTTACTCCAGGACATAGCTGTCATTCCTTGGATACCCTAAACTTCCTAGATGTTCAGAGATCTGACATAGAGAATGGCTGGGCCAAGGCTGTAGTGGAGGCTGATTCAATCACTACTGCCTCTCGGATGGGCCACAGAGTGTTCACGTTTCCAAAGTCAAAAGCTTTGAAAACGTTTTCCAATTCTTCAAGTTCAAGTATGAAACCCATGTTATGGACTTACTACCTGTAGTTAGTTAAAATCAATTTAGTAAATTAATGTATTTGTAATTGTTTGTCCAGAGTCAATTTCCAATCAGAGATTCTGAGACGCGTGGTCCGTTAGAACGATTCTGAAGGTGTCACAATCTATTGCAGGACACTAGACTGGACAGGACAGACTAGACTGGACAGACTAGACAGGACAGactagactggagagactggacaGACTAGACAGGACAGACTAGACTGGACAGACTAGACTGGACAGATTAGACTGTATTAGTGTCTATGTGGGGATAGCctgccaacaaaaaaaaaatatttttcagtTTGCCAATGTTACCATTTGTTTCACATCAGTGAGCCTTACTTTTGCTTTAACCTCTGATCTGTGAATTTACCTAAATGTATCTGAAGCAGAAGCCATTTGTTCAAATGAGCACAATCCCTGAGTTAGTGCACatgttcatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctgtctgtctgtctgtctgtctgtctctctgtttgtctgtaggtctctctctctctgtctgtctgtctgtctctctgtctgtctctctgtctgtctgtctgtttgtctgtcggtctctctctctctttctctctgtctttgtccatCCATGAGGAGTGTATATATAGTTTTTTTAATGGGATGCCGTTCTTTAGCTTCCTCAGCGTGAGTTAAGACTCATTACTCCAGTGTCTTGTCGCAGCTAAACTTTCCTAAGTACTGTGTGAGTTTAGTTGTATCTGTTTCTATGCGTTTCTGTGAGTTTTTGCTGTGTGGCCGCAGATTGGTGGGTGTTAGTTAATCATTTGTCCATGAAAATGTTTTTGGATTGATGACTGAGTGCCATTGTATAATTGTAACCTGTCTTACGGACCATTTAAAACAAGAGGATTACATTCCCCTTCACTCTGCCATTCCTACCATCCCATAGCAGAGGCTACTGGACAAGTACTCTGAAAAGCTCTCTCTCTACATAAATATAGACTGTTTCTTGATTCTTAATTCAATAGCTTACTTATAACCATCCCTGTGACATTCTCTGCCTGTTCCATAGTAGCCACAGTTTCCCTTAGGACTGTACTGAAGTCCAGACCTGGGACAGAGAGAGTATGAGACAGGATAGACACTTGTCCTTGTGTTGTGTCTATATCCCTggtagatttttttttgtgtgtgtgtatgaatgggagTGTATGCATGAGTGgctgtgtgtacacgtgtgtgtgtgagcacatgtgtgtgtttgtaagcgAGAGAGCTACCTCAGCACTAGATGCCACTCCTGTTGTCCACCTTGTCCACCTAACTCAGACGGTGAGGTGCAGGGTAGCTGCTCACTCGTACCACCACTGTAGGCTATACGTACTGTAGAAATGCAGGAGAGCCATTGCAAGGAGGACATGGCCGATTTCATGCATGGGAAGCAACACATGTTAATTCATTTTCCAAGTAGGCTAACATTGTTagaatatgtgtgtatgtatgtaaataagATGGAAAAAATGCAATGACAATATTCAGGTTGCTCTATAGTAGGCCTATGTATTTGTAAATGGTTTGCACCCTGGAAATTGAACATGAAAATAAACATTGTCTAAACACTCCTGGATGGAACAATCCTGCTTGGGTTGTGTCAGACAGTACTCCACCTGGACACAGAGCCATTGGAAgcagtcctgtctgtctccaacacgCCCATGGAGCCTGTCTGTCAGTCCGGAGCATGACTGCTGAGTGTGCCTGTGGCTGAGAGTATCAGGGACCTCACAGAGACAATCTGCCCTGTGACCTTTGGTCTCACCTATGTACCTGAACTATGAGCACAAAGATGAACTCTGGGACAGCTAGCGGCAACCCCGGCCTGCCCCACCCCGCCCCGCCGGTCCGCTCCTCTTCTGCGGTCGCACCTGTACATTCCTCTCTTTTGAATGTGTAAACCTGTACACGTGGTGTGAAAATTCCTCTATAAATGTGTATCAAGAGAATGGAACAAAGACAAAAAAGCGTTTCTTTTTAAATTATTCCTATTATTATTCTACTATTGTCATCATGTGGGTTTGTTAACCGCTGATCCGTCTGGTAAACCTCAGCAGGCCCCCATCTTTGGAAACAGACAGATGAGAAAAAGCGACAGGGGAAAACTAAGGTTTCGGATAAGCTATTTTTAATTGTTAAAGCTATAGACTTTTTTAAATTATGAATTGTGCATGGCTGTGTCTTGAGTGTAAAACAAGAAAATACTGCAGTTTGGGAACTGGActgaaataaaatgaaaaaatg
>TU1016804
ggtgtgtgtgtttgttttccaAGCCATTTGGCTTACTCCAGGACATAGCTGTCATTCCTTGGATACCCTAAACTTCCTAGATGTTCAGAGATCTGACATAGAGAATGGCTGGGCCAAGGCTGTAGTGGAGGCTGATTCAATCACTACTGCCTCTCGGATGGGCCACAGAGTGTTCACGTTTCCAAAGTCAAAAGCTTTGAAAACGTTTTCCAATTCTTCAAGTTCAAGTATGAAACCCATGTTATGGACTTACTACCTGTAGTTAGTTAAAATCAATTTAGTAAATTAATGTATTTGTAATTGTTTGTCCAGAGTCAATTTCCAATCAGAGATTCTGAGACGCGTGGTCCGTTAGAACGATTCTGAAGGTGTCACAATCTATTGCAGGACACTAGACTGGACAGGACAGACTAGACTGGACAGACTAGACAGGACAGactagactggagagactggacaGACTAGACAGGACAGACTAGACTGGACAGACTAGACTGGACAGATTAGACTGTATTAGTGTCTATGTGGGGATAGCctgccaacaaaaaaaaaatatttttcagtTTGCCAATGTTACCATTTGTTTCACATCAGTGAGCCTTACTTTTGCTTTAACCTCTGATCTGTGAATTTACCTAAATGTATCTGAAGCAGAAGCCATTTGTTCAAATGAGCACAATCCCTGAGTTAGTGCACatgttcatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctgtctgtctgtctgtctgtctgtctctctgtttgtctgtaggtctctctctctctctgtctgtctgtctgtctctctgtctgtctgtctctctgtctgtctgtctgtttgtctgtcggtctctctctctctttctctctgtctttgtccatCCATGAGGAGTGTATATATAGTTTTTTTAATGGGATGCCGTTCTTTAGCTTCCTCAGCGTGAGTTAAGACTCATTACTCCAGTGTCTTGTCGCAGCTAAACTTTCCTAAGTACTGTGTGAGTTTAGTTGTATCTGTTTCTATGCGTTTCTGTGAGTTTTTGCTGTGTGGCCGCAGATTGGTGGGTGTTAGTTAATCATTTGTCCATGAAAATGTTTTTGGATTGATGACTGAGTGCCATTGTATAATTGTAACCTGTCTTACGGACCATTTAAAACAAGAGGATTACATTCCCCTTCACTCTGCCATTCCTACCATCCCATAGCAGAGGCTACTGGACAAGTACTCTGAAAAGCTCTCTCTCTACATAAATATAGACTGTTTCTTGATTCTTAATTCAATAGCTTACTTATAACCATCCCTGTGACATTCTCTGCCTGTTCCATAGTAGCCACAGTTTCCCTTAGGACTGTACTGAAGTCCAGACCTGGGACAGAGAGAGTATGAGACAGGATAGACACTTGTCCTTGTGTTGTGTCTATATCCCTggtagatttttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagatgaatgggagTGTATGCATGAGTGgctgtgtgtacacgtgtgtgtgtgagcacatgtgtgtgtttgtaagcgAGAGAGCTACCTCAGCACTAGATGCCACTCCTGTTGTCCACCTTGTCCACCTAACTCAGACGGTGAGGTGCAGGGTAGCTGCTCACTCGTACCACCACTGTAGGCTATACGTACTGTAGAAATGCAGGAGAGCCATTGCAAGGAGGACATGGCCGATTTCATGCATGGGAAGCAACACATGTTAATTCATTTTCCAAGTAGGCTAACATTGTTagaatatgtgtgtatgtatgtaaataagATGGAAAAAATGCAATGACAATATTCAGGTTGCTCTATAGTAGGCCTATGTATTTGTAAATGGTTTGCACCCTGGAAATTGAACATGAAAATAAACATTGTCTAAACACTCCTGGATGGAACAATCCTGCTTGGGTTGTGTCAGACAGTACTCCACCTGGACACAGAGCCATTGGAAgcagtcctgtctgtctccaacacgCCCATGGAGCCTGTCTGTCAGTCCGGAGCATGACTGCTGAGTGTGCCTGTGGCTGAGAGTATCAGGGACCTCACAGAGACAATCTGCCCTGTGACCTTTGGTCTCACCTATGTACCTGAACTATGAGCACAAAGATGAACTCTGGGACAGCTAGCGGCAACCCCGGCCTGCCCCACCCCGCCCCGCCGGTCCGCTCCTCTTCTGCGGTCGCACCTGTACATTCCTCTCTTTTGAATGTGTAAACCTGTACACGTGGTGTGAAAATTCCTCTATAAATGTGTATCAAGAGAATGGAACAAAGACAAAAAAGCGTTTCTTTTTAAATTATTCCTATTATTATTCTACTATTGTCATCATGTGGGTTTGTTAACCGCTGATCCGTCTGGTAAACCTCAGCAGGCCCCCATCTTTGGAAACAGACAGATGAGAAAAAGCGACAGGGGAAAACTAAGGTTTCGGATAAGCTATTTTTAATTGTTAAAGCTATAGACTTTTTTAAATTATGAATTGTGCATGGCTGTGTCTTGAGTGTAAAACAAGAAAATACTGCAGTTTGGGAACTGGActgaaataaaatgaaaaaatg

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1016794 False 2738 lncRNA 0.44 2 45323966 45326807
TU1016797 False 2598 lncRNA 0.43 3 45323966 45326807
TU1016804 True 2740 lncRNA 0.44 2 45323966 45326807

Neighbor


gene id symbol gene type direction distance location
LOC110534028 LOC106603112 coding downstream 142803 45165618 ~ 45181163 (-)
LOC110534025 LOC106603111 coding downstream 306520 45011329 ~ 45017446 (-)
LOC110534024 LOC106603104 coding downstream 313019 45003241 ~ 45010947 (-)
LOC110533119 LOC106603113 coding downstream 345710 44878607 ~ 44978256 (-)
LOC110534031 LOC106603108 coding upstream 504 45327311 ~ 45381903 (-)
LOC110534045 psmb6 coding upstream 289067 45615874 ~ 45629020 (-)
pold3 pold3 coding upstream 358448 45685255 ~ 45697214 (-)
LOC110534047 NA coding upstream 373482 45700289 ~ 45702447 (-)
wdr73 LOC106603095 coding upstream 381350 45708157 ~ 45710654 (-)
G893834 NA non-coding downstream 35453 45288152 ~ 45288513 (-)
G893782 NA non-coding downstream 43076 45193129 ~ 45280890 (-)
G893781 NA non-coding downstream 45444 45274474 ~ 45278522 (-)
G893822 NA non-coding downstream 60482 45262143 ~ 45263484 (-)
G893508 NA non-coding downstream 364454 44954180 ~ 44959512 (-)
G893882 NA non-coding upstream 61000 45387807 ~ 45388036 (-)
G893885 NA non-coding upstream 62237 45389044 ~ 45389258 (-)
G894636 NA non-coding upstream 118658 45445465 ~ 45445714 (-)
G894640 NA non-coding upstream 129176 45455983 ~ 45456238 (-)
G894664 NA non-coding upstream 168766 45495573 ~ 45549686 (-)
G893541 NA other downstream 554894 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 1015033 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 1114702 44199178 ~ 44209264 (-)
G892965 NA other downstream 1612997 43710485 ~ 43710969 (-)
LOC110534046 LOC107567170 other upstream 420508 45747090 ~ 45751405 (-)
G894917 NA other upstream 590472 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 1903997 47203241 ~ 47234608 (-)
G896841 NA other upstream 2660954 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 3554920 48881449 ~ 48907973 (-)

Expression



Co-expression Network