G893880


Basic Information

Item Value
gene id G893880
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45387122 ~ 45387370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1016882
atcagctgatgtaagaagggctatataaatacatttgatttgattttatgacatgttttctcaacaacaggttatggtcaataatatcaaagactgcacagaaatctaacagtacagctccaacaatcttcttattatcaatttctttcaaccaatcatcaataatttgtgtcagtgcagtacatgttgagtgcccttccatataagcatgctgaaagtctgttgttaatttgtttacagagaaatagc

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: RNA-directed DNA polymerase from mobile element jockey-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1016882 True 249 lncRNA 0.33 1 45387122 45387370

Neighbor

gene id symbol gene type direction distance location
LOC118937071 NA coding upstream 24836 45362233 ~ 45362286 (+)
LOC110534030 LOC106603107 coding upstream 61248 45290557 ~ 45326891 (+)
LOC110534029 LOC106603110 coding upstream 110152 45200684 ~ 45276970 (+)
LOC110534924 NA coding upstream 231458 45154412 ~ 45155664 (+)
LOC100135968 LOC100135968 coding upstream 237437 45125552 ~ 45149685 (+)
LOC118936925 LOC106603184 coding downstream 50821 45438191 ~ 45443347 (+)
LOC110534037 LOC106603102 coding downstream 57708 45445078 ~ 45450123 (+)
LOC110534036 LOC106563427 coding downstream 72290 45459660 ~ 45549430 (+)
LOC110534033 LOC106603099 coding downstream 166111 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 coding downstream 234794 45622164 ~ 45654911 (+)
G893876 NA non-coding upstream 2399 45384517 ~ 45384723 (+)
G892607 NA non-coding upstream 106229 45193997 ~ 45280893 (+)
G892532 NA non-coding upstream 221119 45057850 ~ 45166003 (+)
G893881 NA non-coding downstream 71 45387441 ~ 45387735 (+)
G893991 NA non-coding downstream 212412 45599782 ~ 45599984 (+)
G893999 NA non-coding downstream 220612 45607982 ~ 45608316 (+)
G894002 NA non-coding downstream 225211 45612581 ~ 45612904 (+)
G894005 LOC106603098 non-coding downstream 229893 45617263 ~ 45618561 (+)
G892499 LOC106603104 other upstream 376273 45008834 ~ 45010849 (+)
G892191 NA other upstream 727631 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 1305712 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 1446565 43938412 ~ 43940557 (+)
G891856 NA other upstream 1643632 43742917 ~ 43743490 (+)
LOC110534056 LOC106603182 other downstream 513675 45898515 ~ 45901940 (+)
G894204 LOC100136012 other downstream 728915 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 1239922 46627292 ~ 46700540 (+)

Expression


Co-expression Network