G894005 (LOC106603098)


Basic Information

Item Value
gene id G894005
gene name LOC106603098
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45617263 ~ 45618561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1017021
TGAGACAATATTTTTGAGTGGTATCGAGAGACACACTATTGCTGTGCTCTGAGGAGTTATTTTAGTGTAGAGGTATTTGTCAATGTTGAAGTAACCAAttattttaaagttttttttttttaagtcatacAACCTAGGCCCTACGGTGTTACCTGTGAAAGCCCAGCTGGTAGGTGACTGCATCAGCAACAGCCTGTGTGTCAGCTGCAGACCCAGAGCGGCAGCAGAAGATGTGGTCGTGAATGGGAGTCAACTTGTCAGTAACTCGATTGGCAATGTAAGCGCCTGTTGTTGTTCGGGAGTCAGCACCAATCACAACCCCTCCATCAAACTCCACTGCCATTATGGTTGTCCCAGTGCTAACTTCTTCTTGTGCCCATTCTGGTACAAAATCATGTGTACTAAAAGCATTTTCAGAACGGCCCGCTGACATGTACGCAGCCATCTTGAACAGTTAAATAATGCTCTTCTTTGCTGGTGGACAGGTTTAGTTTAACATATTCTGTTGTGCTGAATATCGCCACCTTCTGAATTGCATGAGTAACGTTACATAAACTCCAGGGGTGGGGGTTCTTGGTGATAGACACTGATAGATAATGATTGGACTATCTATGACAAGGTCAAATGCCAGACTTACTAGAAGTATTA

Function

NR:

description
proteasome subunit beta type-6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1017021 True 648 lncRNA 0.43 3 45617263 45618561

Neighbor

gene id symbol gene type direction distance location
LOC110534033 LOC106603099 coding upstream 24934 45553481 ~ 45592329 (+)
LOC110534036 LOC106563427 coding upstream 67833 45459660 ~ 45549430 (+)
LOC110534037 LOC106603102 coding upstream 167140 45445078 ~ 45450123 (+)
LOC118936925 LOC106603184 coding upstream 173916 45438191 ~ 45443347 (+)
LOC118937071 NA coding upstream 254977 45362233 ~ 45362286 (+)
LOC110534042 LOC106603097 coding downstream 3603 45622164 ~ 45654911 (+)
LOC110534038 chrdl2 coding downstream 47803 45666364 ~ 45673837 (+)
LOC118966785 NA coding downstream 83684 45702245 ~ 45703069 (+)
LOC110534041 LOC106603094 coding downstream 86812 45705373 ~ 45708059 (+)
LOC118936928 NA coding downstream 97812 45716373 ~ 45716966 (+)
G894002 NA non-coding upstream 4359 45612581 ~ 45612904 (+)
G893999 NA non-coding upstream 8947 45607982 ~ 45608316 (+)
G893991 NA non-coding upstream 17279 45599782 ~ 45599984 (+)
G893881 NA non-coding upstream 229528 45387441 ~ 45387735 (+)
G893880 NA non-coding upstream 229893 45387122 ~ 45387370 (+)
G894006 NA non-coding downstream 61 45618622 ~ 45618937 (+)
G894007 NA non-coding downstream 1342 45619903 ~ 45620130 (+)
G894021 NA non-coding downstream 39257 45657818 ~ 45658048 (+)
G894028 NA non-coding downstream 58041 45676602 ~ 45676897 (+)
G892499 LOC106603104 other upstream 606414 45008834 ~ 45010849 (+)
G892191 NA other upstream 957772 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 1535853 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 1676706 43938412 ~ 43940557 (+)
LOC110534056 LOC106603182 other downstream 282484 45898515 ~ 45901940 (+)
G894204 LOC100136012 other downstream 497724 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 1008731 46627292 ~ 46700540 (+)
G895515 NA other downstream 1421953 47040514 ~ 47042783 (+)

Expression


Co-expression Network