G894037


Basic Information

Item Value
gene id G894037
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45689738 ~ 45747021 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1017091
acattttaaactcaggctgtaagacaaaatgtggaaaaagacaaggagtgtgaataccttctgaagacaCTGATAGTTTCAAACAATCTGGTTTGATTTAGCTTTTTGTCCCCACCCCACTACTGATTAACTTGTAATTTTAGGAACAGCAAAAATAGTTTGAGCAAGCAATATGTCAATATCTTTATATTGGCGTTGTCATAGCGCATCACTAATGTATTTCAATCACCATTTTATTTCAGCGGGCTTTATCTCGCTTTGAAAAAACTTGAAGCCAATTCCCAATGATATTGGGCTGGATGCTAATATGGGAAAAACTGCTGAATGATCAGAGAAATTATAGTCGAAGCTTTTCTTTTAGGCTATTTACAGAAAAATAAGTCCTGGACGCTTTGCTAGCAATAAGACAAGAAATCCACAGGGGCCGACCAATTGGATCCCGGTCTGCTTTAGTGTGCAGGGCCCATCATTGTTGGCTTAATATCCCACATTAAACATTGTTATCACGAGaaaaaaaagcaacaaaaaaaaagtataGAGATCAGCTGGCGCTGCCACTTCATAAGGGCACGGATAGTAGTGATCTTAAAATCATTTTTCGCCCCATTTCAAGGCTTCCTTGTCGAGATAGGAATCTTGAATCTTTAGTAAAATGTACAACTtcgctctttttttttttatctgagaaatgtatttagaatgtaaaccaatcagggtttaggcctgggcatAGCACCATCACAGCAACCACTTTAGTTATTCATGATCTTATCCATGCTTTAGACACTAAAAATAAATGCTGCTTTGTTTGTGGACCTGTCAAAAGATTTGATTGAATAAGTTGTCCTCGATAGGCATGAGCTCTGACGGCTGTTCATGGTTTCATGATTATCTAagtgacagaactcaggccatcgTGATTGATGGGGTTAAGTCTGAATTTCCTGACGTACATAAAGGTGTACCACAGCGAGCGTTTTTGGGacagttttttcccctcactATTTATATGTACACACCATTGGTCAATCTGCACTTCctctacagtgcatttgggaaagtatttagacagcttcacttttttcacattttgttacgttacagcattattctaaaatggatgtaaAAAACGAATCctcaggcctcccgggtggcacggtggtctaaggcactgcgtcgcagtgctagctgtgccactagagattctgggttggagtccaggctctgtcgcagccggccacaaccgggagacccatgaccgcacaactggcccagcgtcgtccggatttggcggcaaggatgtccttgtcccgtcgcactctagcgactcctgtggtgggccgggcacagtgcacgctgacacagtcgtcaggtgtacagtgtttcctataacacattggtgcggctggcttccaggttaagcgagcagtgtctcaagaagcagtgcagcttggttgggttgtgtttcgcctctcccgagtccgtacaggagttgcagcgatgagacaagactaactaccaattggataccacgaaaagggggAGGGGGTTGTGGGCCCCCAGGAGGTCATGGGCCCCGGAGCACTTGCTCTGCATGTCCTTTCGGTAATCTGACCCTCCACAATCTTGTGGATACAAGATACAAGTTCAAACCATTTGTCTTGCAAATGGAAAAGGCCTATTAATTTGTGCAGCCCCATAGGAGAGAAGGGTAGAAAGAAGCCTGAGGTGAATCGTAAAGGATAACAAGGCAAGACAATTCTGTAGTTTGCACACCAGTTTGTCGTTTCCAGCCATGTCAGATAATTGACGTTAAAAATATGTCATAAAATATTTTGTTTGTGAGATATTGACAGCGAGTTCCTAAAAAGGCACCTGGTATTATTGTGAATGTACCTTACTAAAAATGGTGTGTTGACTATGCGCTGAGAGGCAGGCTACATTTTGCTATGTTGTCTTTACTTGAAAAGCAAGAGTTAGAAAACCGGCCGTGTGAGTGATGTAGGTGATATCATTGTCCTTTAAGTCATGCTCGCAGTGAATATCGGTTTGTTATTTGTTTATTAGACTTTACACGAGGCTAAAGTGCCATCCTTTTTATTTGTTGGTAGTTACTTtcgctgtaatgtaatgtaatgtatagtaTACCTTTGGTTGGTTAAAGCTTACCGTTGTTTCGACAGAGGACATAtgaataaggtgtgtgtgtgtgtgttgactttaATATGCACTCCAggatcttaagcacaacaaagttgTAACATATAGTGCAAATTGGATTCATAACATATGAATTGCAAaaaatatttataataataataataatttgccgGCCGTGACATATtttacgaaatggatgatgtaaTACACAAATTGAGGAAGTAGTACACAAAAAGGGGGcccacttttggctcgtgagcaccactttcaaaaTTACTGGCTGATATAATCAAACGTTTGAGAGTGCATATTTAACATGGAAGAGGAGTGGTCGGTATTTCTACTTGGATTACTATTTGTCAGACAAGGTTTTCTCGACTGGTCGACCTCGCATTCGACATTGCGTAGAATATAGTATTTTTTCTGTCAATTTGTATTTTCTCATTAGAGTGAAAAACTAGGAAGCATTGATTTGAAGTTTAAATGGAGCAATTTCTCCTCTTCTGTCCAGTCCTATAAATGTAGCCTTCAGACCTGTTGACATTTGGACCATTGTCGGGACAACGCCATATACTTTGGACCCTTTACTCATCAATCATGAGAGAACAATGGTTTTACTCTGCTATTCATAAGTTACAcaacaaccacaaacacacagagacaatttGAAATGTTCAGACCTTGTTCGTTGTCACGGCGCAGTTGGCCGACCTCTCCCTCTCAAATCAGTGAATCCTGTTAGTTGAGATGAATATTGAACTAACAGTGGCCCTAGTAcctgtgtccacacacacacctgctcatCTACCTGTAGTGTAAGCATCACGTGACACCGCCCTTGCTTGCTTTGCATGACTTGACTGCGACCAAGGAGCACAGCACCCAGGGTACTATTTACAAATGGACAACACATGATATGCTTATGTTGACTATCTGTTTGTTTAATTCATATATTTTTCTTTGATCGCCTGTAATGCATCAATGGAATGATGTGAGGCACCTGCAGTGTAGGCCTACTTCAATAACACAACACTAGTTTTATATGCAAACAGTTTGATCCTCAATATAATATAGCTATTTTGTGTTAAAGTTGTCAATTTCAAAATAACCAAAATTGGGCTATTATTGGCACTAATGATGTTGAAACCCTGAAAAGGTTCACAGCACTCTTAGATGTTAGACATTTTACAGTAAAGTATTGCTGAGGTTTTTAGACGGATTTAGGTGCAATTTAAGTTAATGTGTAATCTCTAATTGTCAGGGC

Function

NR:

description
RNA-directed DNA polymerase from mobile element jockey

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1017091 True 3424 lncRNA 0.41 2 45689738 45747021

Neighbor

gene id symbol gene type direction distance location
LOC110534038 chrdl2 coding upstream 15901 45666364 ~ 45673837 (+)
LOC110534042 LOC106603097 coding upstream 34827 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 coding upstream 97409 45553481 ~ 45592329 (+)
LOC110534036 LOC106563427 coding upstream 140308 45459660 ~ 45549430 (+)
LOC110534037 LOC106603102 coding upstream 239615 45445078 ~ 45450123 (+)
LOC110534034 LOC106603091 coding downstream 12679 45759700 ~ 45770162 (+)
LOC110534050 snaa coding downstream 31262 45778283 ~ 45782588 (+)
LOC110534052 LOC106603088 coding downstream 45187 45792208 ~ 45800378 (+)
LOC110534054 LOC106603087 coding downstream 59664 45806685 ~ 45813020 (+)
LOC110533121 ryr1 coding downstream 66153 45813174 ~ 45885942 (+)
G894028 NA non-coding upstream 12841 45676602 ~ 45676897 (+)
G894021 NA non-coding upstream 31690 45657818 ~ 45658048 (+)
G894007 NA non-coding upstream 69608 45619903 ~ 45620130 (+)
G894006 NA non-coding upstream 70801 45618622 ~ 45618937 (+)
G894068 NA non-coding downstream 37648 45784669 ~ 45785365 (+)
G894067 NA non-coding downstream 38502 45785523 ~ 45785778 (+)
G894070 LOC106603090 non-coding downstream 41153 45788174 ~ 45788596 (+)
G894071 NA non-coding downstream 41675 45788696 ~ 45788998 (+)
G894072 NA non-coding downstream 42421 45789442 ~ 45789736 (+)
G892499 LOC106603104 other upstream 678889 45008834 ~ 45010849 (+)
G892191 NA other upstream 1030247 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 1608328 44077660 ~ 44081410 (+)
LOC110534056 LOC106603182 other downstream 154024 45898515 ~ 45901940 (+)
G894204 LOC100136012 other downstream 369264 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 880271 46627292 ~ 46700540 (+)
G895515 NA other downstream 1293493 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 1395023 47132135 ~ 47151549 (+)

Expression


Co-expression Network