G894072


Basic Information

Item Value
gene id G894072
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45789442 ~ 45789736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1017136
TTGCTTTTTGTACTATTCTTGAGCATAAAGGCCTTGAAGCAGATCGCTGTGTGCTCCCTTTGGTTGTTCAGTGCTCCCTCTGCCATTTTTCTTGCGTTCCTAACAACTCAACAGAAAAACGGTCCTGTGGTGAAAACAGATTGCTAACACCCAATGCGCACCACTGTCGTGGTTAAGTTAAGGTTGTTTATCAACACTTTTCCCAAACGTTAAAACTTCAAAAATCTCAAAAGATAGCCATCTGGGGGATGCTAGCTATCCGAGTTCTTGTTCTTCACCAGTAAAAAAAACACAG

Function

NR:

description
radial spoke head protein 6 homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1017136 True 295 lncRNA 0.42 1 45789442 45789736

Neighbor

gene id symbol gene type direction distance location
LOC110534050 snaa coding upstream 6854 45778283 ~ 45782588 (+)
LOC110534034 LOC106603091 coding upstream 19280 45759700 ~ 45770162 (+)
LOC110534032 LOC106603093 coding upstream 48599 45724817 ~ 45740843 (+)
LOC118936928 NA coding upstream 72476 45716373 ~ 45716966 (+)
LOC110534041 LOC106603094 coding upstream 81383 45705373 ~ 45708059 (+)
LOC110534052 LOC106603088 coding downstream 2472 45792208 ~ 45800378 (+)
LOC110534054 LOC106603087 coding downstream 16949 45806685 ~ 45813020 (+)
LOC110533121 ryr1 coding downstream 23438 45813174 ~ 45885942 (+)
LOC110534056 LOC106603182 coding downstream 108779 45898515 ~ 45901940 (+)
LOC110534057 LOC100136559 coding downstream 114162 45903898 ~ 45910889 (+)
G894071 NA non-coding upstream 444 45788696 ~ 45788998 (+)
G894070 LOC106603090 non-coding upstream 846 45788174 ~ 45788596 (+)
G894067 NA non-coding upstream 3664 45785523 ~ 45785778 (+)
G894068 NA non-coding upstream 4077 45784669 ~ 45785365 (+)
G894037 NA non-coding upstream 42421 45689738 ~ 45747021 (+)
G894074 NA non-coding downstream 11188 45800924 ~ 45804121 (+)
G894084 NA non-coding downstream 82964 45872700 ~ 45872787 (+)
G894086 NA non-coding downstream 85474 45875210 ~ 45876191 (+)
LOC110534042 LOC106603097 other upstream 145886 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 197133 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 778593 45008834 ~ 45010849 (+)
G892191 NA other upstream 1129951 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 1708032 44077660 ~ 44081410 (+)
G894204 LOC100136012 other downstream 326549 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 837556 46627292 ~ 46700540 (+)
G895515 NA other downstream 1250778 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 1352308 47132135 ~ 47151549 (+)

Expression


Co-expression Network