XLOC_002797 (ftr54)


Basic Information

Item Value
gene id XLOC_002797
gene name ftr54
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25819996 ~ 25823258 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005178
AGAACCAGGAAACAATTGCAATTGATAGCTGCTGTTAAGCTGTCCTCATCTTAAAAGAGATTTTAAATGCGAACACAAAACTGGCGATGGCTGAAGGCAGGCTTACTGTGAGCCATGAAGAGTTGAGCTGTTCAATCTGTCTAGATCTACTGAACAATCCGGTGACCATCCCTTGTGGACACAACTACTGTATGAACTGTATTAGACGTCACTGGGATCAAAATGCTAATAGAGGAGTTTACAACTGTCCTCAGTGCAGACAGAACTTCGATGCAAGACCTTTTTTAGGGAGGAATATGATGGTTGCTGAAATGGTGGAGAGATTCAAGAGGACACAGACCGCTCATGTTTCTCAAATTGAAGCTGGGCCTGGAGATGTGCAGTGTGACGTCTGCCCAGGCAGAAAATATAAAGCCATCAAGAGCTGTTTGTTGTGTCTGAACTCTCTCTGTCAAATTCACTTCCAACAACATGAGGATGTTTTCGAAGGTGAGAGACACTGTTTGATAGATGCCACCGATCAGCTTCGGGACATGATCTGTCCAATACACAATGAGCTTTTGGAGATTTTTTGTCGTACTGACCAGATGAGCATTTGTATACAGTGTAAGAGGGGTATTCACAGAAACCATGATGTGTCAACAGGAGCAGACAGATCAAATCAGAGTTCTTCAACTCTCTCTGCGCCACCTGAAACGGTCAGCTTTGAGTTTGGTGCTCGTTCTTCTGCTGCTAGAAAAACCTTTTCTAAGAGACTAAAGAAAAAAATGGATGATTTCCTTAATTCTGAGGTCACAGTTGTATCCGGCTCAGTAAAGCGCTACAAAAGTCCAACTGATGGGCCCAGGAACCGGAATGAGATCCTGCAATACTCACACCAACTCTCAATGGACTCAAACACTGTGAATGGAATAATCCAGCTGTCTGCAGGGAACAGAGTGGCAACTAATAATGGCACAGTCCAGCgatatcctgatcatccagagaGATTTGATTGCTGGCCTCAGGTCTTGTgtaaagagagtgtgtgtggacgtgcATATTGGGAGGTCGAGTGGAGTGGGAGTGCTGGCGTAGGTTTATCGCTGTCCTATAACACTATTGGCAGGAAGGGAAGGGGTGATGACAGCAAATTTGGATGTAGTGACCAGTCTATAAATTTGTACTGCTCTCCTACCAAATATGCATTAtgggacaaaaacaaaaagactaAAATCAGCgtaaacacttcaaaaataaagTCCTCTAGATTAGGAGTGTATGTGGATTATAGCGCCGGAATTGTGTCCTTCTTCAGCATCTCTGACAAAATGAGACTCATCTACATATTCCCCACTACGTTCACCCAACCTGTCTATCCTGGCTTTAGGGTTTATTTTGGATCAGCAGTAAAACTCTGTGAACCAGCAGTAAACTGTAAATGATTTAGAGGTGTAATATTCAGTAACACAAAGTGGTATTTTATTTCACTACATCAATTCATGAAACATCAGGATCATCATTAATTGACCTACAAATGCATTGAAATAgttttaacaaaaaacaacacatgtttgaaggcgtgagaacagatgctcttgacagttccggaggtatttaatattataataacactaatactgaaacggtcattttagaatgaccaaaacaacatttcagatgtttttcagTGCAGTCAGCctactggtttgtccattcacacacgtCCTTATCctcacatgatctcttattacaaaatcacatgacttttttaatatgcatactggaatttgtttgctGTAAATGTTTACATCGTAGTTTTTGCTTATcgaataaaatgtttattcta

Function

symbol description
ftr54 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0000785 chromatin cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070620-19 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in chromatin and nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000043850

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005178 True 1828 mRNA 0.41 4 25819996 25823258

Neighbor

gene id symbol gene type direction distance location
XLOC_002796 postna coding downstream 2142 25770467 ~ 25817854 (-)
XLOC_002795 postna coding downstream 50662 25762196 ~ 25769334 (-)
XLOC_002794 sod1 coding downstream 103043 25694395 ~ 25716953 (-)
XLOC_002793 NA coding downstream 128326 25690872 ~ 25691670 (-)
XLOC_002792 NA coding downstream 132778 25686901 ~ 25687218 (-)
XLOC_002798 trpc4a coding upstream 6004 25829262 ~ 25860102 (-)
XLOC_002799 trim3b coding upstream 306572 26129830 ~ 26179805 (-)
XLOC_002800 fhdc3 coding upstream 367549 26190807 ~ 26226228 (-)
XLOC_002801 dchs1b coding upstream 445532 26268790 ~ 26430168 (-)
XLOC_002802 NA coding upstream 617794 26441052 ~ 26447171 (-)
XLOC_002790 NA non-coding downstream 320522 25494173 ~ 25499474 (-)
XLOC_002788 NA non-coding downstream 429323 25380998 ~ 25390673 (-)
XLOC_002779 NA non-coding downstream 967471 24833696 ~ 24852525 (-)
XLOC_002807 NA non-coding upstream 1013578 26836836 ~ 26872413 (-)
XLOC_002808 CR545465.2 non-coding upstream 1069309 26892567 ~ 26895076 (-)
XLOC_002809 NA non-coding upstream 1078014 26901272 ~ 26902305 (-)
XLOC_002813 NA non-coding upstream 1177304 27000562 ~ 27002614 (-)

Expression


Co-expression Network