G894300


Basic Information

Item Value
gene id G894300
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46321179 ~ 46323120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1017456
AGTAATAGGTCAGCGATTAAGGTGATGGGTCAGGTCATAGGTCAGGTTTAAATGATAAAGTAAATCTCAATGTGACTTGGATTTAAAGGGAATAGCGTCGAGACTGGTGCCCCAAAAAATTGGGTGGAAACTCTCTCACCCATGTTAACATCGATCTACTGCTTTTTAACTTTAATAGCACATGTaagatgaatcaaatcaaataagaTTCTACTTACATGTACTACTAAACGATTTACCTAGACGATTTactgtaaaaaaaacatgtttttactgtaATCGTAATGAATGCGTAAACGAATGGATGAATAAAATTCATTGAGGGGAGATGGGATTTGTATTTCACAGTATATTACTGCAATGACATgggattggtgcaagcaggttggctaCTATAGGTCATGTGTTTACATGTTACAGAATATCAATGAATATTGTGTTTTATATCACGTACACTTCCAGAGGTcttaacaaaggcttccaaactggcagCACCGGAAGGGCAAAATAATGGGGCACCACTTTATTTtatcttcatttaactaggcaagtcaggtaagaacaaattcttatttacaataacggcctactccggccaaaccccaatgacgctgggccaattgtgcgccaccctaccACATACCAGTTAAATTGGTATGGTTTAAAAAGTTTAAGGTTTTCGGGACTTCAAGAATCAGATATTCAAAATACAGCAATTACTTCCCCGTTCACCATTACTTCCCAAAATGTACCatcatttacagtatgctgcGATAAAACttttcacagtattttactgttgataatacTCCAAATTACAATATGAATTACAGTTGTTACAGTTTAGTGATAGTGACGCACATGTCAGATCTGTTTGAAACATCGCCATCTCCTGGCCGCATTTACCCACCAGATTCTGTAGCTTGAACTGCCCCATcccccaaaataaaaaataaataaaaataaaataaaaccaaaACATTTTCATTATGGTTTTTATTTTAGTTCGTTTTGGAGTTAAAGATTTTTCAAACGGGtttattaattattttatttcagtttaatAAATCGTTTTTTCATGATTGGTTTTCGTTTTTTCGTTTCCATTTTAGTTTACTATAATAACTTTGGTACCAGCGACAGAAAAACATCCTTGGACACCGACATCTAGGTTATGCGGGTTAAAAATAGATCAAAACATATAAATACGCGTAATGTAGCCTGTGACAGAGCCAATCAATTTGGCAATTAAAAAGTTTACCTGTCAAGGCACCACTGGATGCTGCATTGACTGCCGTCTCCGCCATCTTCGTAGTCACCGGCGGATGCCACCAAACGTATGTATGAAATGTCGTAAACACCCCGCAGCGAAAGGCTCCAAATCAAGTCTAGGGAAAAAGCATCACCAGCCTCTACCGTCAGGCGCAGGAGGAGAACATAGGCTACTATATCAGGGGATGTAGGCCTATCCGTTTTCCACTGCCTCAGCAATCAATATGTATGCTCGCCCGGAATGCTAACGGTGCACAGGCGGTCAGGAGAGCAGGAGGGTATTCGGATGAATGCGGTTACTGAATGAGACCATAGGCTACTATTAAGTTTGCTATTTGATGGTAACGTGTGATCGTAGCTGGTATCCTTGGTTAACGGTTGGCAGGCGGAGAGAAAATGATGCGCTCCAGTTCAGGGCGTACTGGATGGAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1017456 True 1705 lncRNA 0.39 2 46321179 46323120

Neighbor

gene id symbol gene type direction distance location
lipia LOC106603069 coding upstream 42663 46263594 ~ 46278516 (+)
trnac-gca NA coding upstream 91144 46229964 ~ 46230035 (+)
LOC110534070 ccd82 coding upstream 99534 46218372 ~ 46221645 (+)
LOC110534066 pdk3 coding upstream 158859 46151680 ~ 46162320 (+)
LOC110534065 LOC106603181 coding upstream 169642 46143690 ~ 46151537 (+)
prdx4 prdx4 coding downstream 51577 46374697 ~ 46382856 (+)
sat1a.2 sat1 coding downstream 69792 46392912 ~ 46395196 (+)
c10hxorf58 cssa04hxorf58 coding downstream 81188 46404308 ~ 46421729 (+)
LOC110534088 LOC106603060 coding downstream 109644 46432764 ~ 46442767 (+)
LOC110534091 LOC106603177 coding downstream 149085 46472205 ~ 46479506 (+)
G894309 NA non-coding upstream 5303 46315399 ~ 46315876 (+)
G894294 NA non-coding upstream 7264 46306602 ~ 46313915 (+)
G894289 NA non-coding upstream 16993 46303661 ~ 46304186 (+)
G894321 LOC106603070 non-coding upstream 41022 46279622 ~ 46280157 (+)
G894248 NA non-coding upstream 111295 46209461 ~ 46209884 (+)
G894306 NA non-coding downstream 20374 46343494 ~ 46346343 (+)
G894344 NA non-coding downstream 62686 46385806 ~ 46386052 (+)
G894354 NA non-coding downstream 88269 46411389 ~ 46459712 (+)
G894303 NA non-coding downstream 124187 46447307 ~ 46464950 (+)
G894390 NA non-coding downstream 170602 46493722 ~ 46493943 (+)
G894204 LOC100136012 other upstream 203236 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 419368 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 677623 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 728870 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 1310330 45008834 ~ 45010849 (+)
G894437 LOC106603023 other downstream 304172 46627292 ~ 46700540 (+)
G895515 NA other downstream 717394 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 818924 47132135 ~ 47151549 (+)
G895652 LOC106603032 other downstream 879805 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 893287 47216407 ~ 47217071 (+)

Expression


Co-expression Network