G894306


Basic Information

Item Value
gene id G894306
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46343494 ~ 46346343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1017462
gcaagtcagctaagaacaaattcttatttactatgatggcctaccaaaaggcctcctgcagggaagggggctgggattaaaaatacaggataaaacacacatcacgacaagagataacattacataaagagagacctaagacaacaacatagcatggtagcaacacaacatggcagcagcacaaaacagggtacaaacattattgggcaacaTTGAGCCTCCCATCCATGCCATTTAAGAGCAAGGGATAAAACAacgtgtgtgtgatatatatatatatatatataggtgtgtccaaacttgaaatatatatatatatatatatatatatatatatttcaagtttggacacacctactcactcattcaagggtttttctcttttctgtagaatagtagtgaagacatctaaactatgaaataacacatatggaatcatgtagtaaccaaaaaagtgttaaacaaattatattttagattattcaaagtagccaccctttaccttgatgacaactttgcacactcttggcattctctcaaccagcttcacctggaatgcttttccaacagttttgcaggagttcccacatatgctgagcacttgttggctgcttttccttcactctgcgttccaactcataccaaaccatctcaattgggttgaggtcaggtgattgtggaggccaggttatctgatgtagcactccatcactctccttctgggtcaaatagcccttacacagcctggaggtgggttgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcgaaaaccagatgggatggtgaatagctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattttaaataaatcactgacagtctcaccagcaaagcaaccccacaccatcacacctcctcctccatgcttcacggtgggaatcacacatgcggagatcatccgttcacctactctgcgtctcacaaggaCAGcagttggactcatcagaccaatttggacttatcagaccaaaggacagattgtcaccggtctaatgtccattgctcgtgtttcttggcctaagaaagtatcttcttcttcttggtgtccttttaatagtggtttctttgcaacaatttgaccataaaggcctgactcacacagtctcccctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcattcatttgggctgcaatttctgaggcactctaatgaacttatcctctgcagcagaggtaactctgggtcttcctttgctgtggcggtcctcatgagagccagtttcgtcataGTGCTCgatgggttttgcgactgcacttgaagtaactttcaaagttcttaattttcacaattgactgaccttcatgtcttaaagtattgctggactgtcatttctctttgcttattttagctgttcttgccaaaataattgcttcctgtagcactaattccaaaaggtttcgggacactgtaaagtcatggagaataagagcacctcctcccagctgcccactgcacagaggataggaaacactgtcacctccgataaatctacgataatcaatcatttcaataagcatttttctacggctggccatgctttccacctggctacccctaccccggccaacatctcagcaccccctgcagcaacttgcccaaacccGCTTCTCCGTCACCCAAATCTAGACAGCTGATgttttgaaagagctgcaaaatctgggtccctacaaatcagctgggctagacaatctggaccctctccattgttgcaacccctattactagcttgttcaacctctctttcgtatcgtctgagatccccaaagattggaaagctgccacggtcagctttccactctagacccaaactgttatagacctacatCCATCCTGcactgcctttctaaaatcttcgaaagccaagttaacagatcaccgaccatttcgaatcccaccgtaccttctccgctatgcaatctggtttccgagctagtcatgggtgcacctcagccacgctcaaggtcctaaacgatatcataactgccatcgataaaagatagtactgtgcagccggattcatcgacctggccaaggctttcgactctgtcaatcaccacattcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctataaccccaaacagcaagcaatgcaggtgtgaaGCACGTTGGCttgaaaaaactccctagaaaggccgaaacctagagaggaaccaggctatgaggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggtcaaataataggtctgggacaggtagcacgtccggtaaacaggtcaggattccatagccacaggcagaacagttgaaactggagcagcagcacggccaggtggactggggacagcaaggagtcatcatgccaggtagtcctgaggcatggtcctagggctcaggtcctccgagagagagagagagagaaagagagaattagagagagcatacttaaattcacacaggacaccggataagacaggagaagtactccagatataacaaattgaccctagccccccgacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgatgatacccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1017462 True 2850 lncRNA 0.45 1 46343494 46346343

Neighbor

gene id symbol gene type direction distance location
lipia LOC106603069 coding upstream 64978 46263594 ~ 46278516 (+)
trnac-gca NA coding upstream 113459 46229964 ~ 46230035 (+)
LOC110534070 ccd82 coding upstream 121849 46218372 ~ 46221645 (+)
LOC110534066 pdk3 coding upstream 181174 46151680 ~ 46162320 (+)
LOC110534065 LOC106603181 coding upstream 191957 46143690 ~ 46151537 (+)
prdx4 prdx4 coding downstream 28354 46374697 ~ 46382856 (+)
sat1a.2 sat1 coding downstream 46569 46392912 ~ 46395196 (+)
c10hxorf58 cssa04hxorf58 coding downstream 57965 46404308 ~ 46421729 (+)
LOC110534088 LOC106603060 coding downstream 86421 46432764 ~ 46442767 (+)
LOC110534091 LOC106603177 coding downstream 125862 46472205 ~ 46479506 (+)
G894300 NA non-coding upstream 20374 46321179 ~ 46323120 (+)
G894309 NA non-coding upstream 27618 46315399 ~ 46315876 (+)
G894294 NA non-coding upstream 29579 46306602 ~ 46313915 (+)
G894289 NA non-coding upstream 39308 46303661 ~ 46304186 (+)
G894321 LOC106603070 non-coding upstream 63337 46279622 ~ 46280157 (+)
G894344 NA non-coding downstream 39463 46385806 ~ 46386052 (+)
G894354 NA non-coding downstream 65046 46411389 ~ 46459712 (+)
G894303 NA non-coding downstream 100964 46447307 ~ 46464950 (+)
G894390 NA non-coding downstream 147379 46493722 ~ 46493943 (+)
G894392 NA non-coding downstream 177520 46523863 ~ 46524283 (+)
G894204 LOC100136012 other upstream 225551 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 441683 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 699938 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 751185 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 1332645 45008834 ~ 45010849 (+)
G894437 LOC106603023 other downstream 280949 46627292 ~ 46700540 (+)
G895515 NA other downstream 694171 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 795701 47132135 ~ 47151549 (+)
G895652 LOC106603032 other downstream 856582 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 870064 47216407 ~ 47217071 (+)

Expression


Co-expression Network