G894401


Basic Information

Item Value
gene id G894401
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46533946 ~ 46534173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1017568
atacaacaaggaacaaaagaaacaaccgaaacagctccgtcgggtgcaaaacacactaaacagaaaataactacccacaaaacccatgtgggcaagagctacctaagtatggttctcaaccagagacaacgacagacagctgtccgtgattgagaaccatacccggccaaaaacaaagaaatacaaaaacatagaaaaaagaacatagaacgcccaccctagtcacac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1017568 True 228 lncRNA 0.43 1 46533946 46534173

Neighbor

gene id symbol gene type direction distance location
LOC110534094 wasf3 coding upstream 15860 46507896 ~ 46518086 (+)
LOC118966790 shisa2 coding upstream 26190 46504220 ~ 46507756 (+)
LOC110534091 LOC106603177 coding upstream 54440 46472205 ~ 46479506 (+)
LOC110534088 LOC106603060 coding upstream 91179 46432764 ~ 46442767 (+)
c10hxorf58 cssa04hxorf58 coding upstream 112217 46404308 ~ 46421729 (+)
gsx1 LOC106603173 coding downstream 32614 46566787 ~ 46568284 (+)
LOC110534098 LOC106603051 coding downstream 50322 46584495 ~ 46595768 (+)
LOC110534926 NA coding downstream 74283 46608456 ~ 46609639 (+)
LOC110534099 LOC106603050 coding downstream 76882 46611055 ~ 46615697 (+)
LOC110534104 LOC106603047 coding downstream 187592 46721765 ~ 46730727 (+)
G894400 NA non-coding upstream 39 46533698 ~ 46533907 (+)
G894399 NA non-coding upstream 434 46533260 ~ 46533512 (+)
G894398 NA non-coding upstream 873 46532853 ~ 46533073 (+)
G894392 NA non-coding upstream 9663 46523863 ~ 46524283 (+)
G894390 NA non-coding upstream 40003 46493722 ~ 46493943 (+)
G894402 NA non-coding downstream 1123 46535296 ~ 46535512 (+)
G894404 NA non-coding downstream 2219 46536392 ~ 46536594 (+)
G894407 NA non-coding downstream 6372 46540545 ~ 46540755 (+)
G894435 NA non-coding downstream 48255 46582428 ~ 46582644 (+)
G894436 NA non-coding downstream 49343 46583516 ~ 46583883 (+)
G894204 LOC100136012 other upstream 416003 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 632135 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 890390 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 941637 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 1523097 45008834 ~ 45010849 (+)
G894437 LOC106603023 other downstream 93119 46627292 ~ 46700540 (+)
G895515 NA other downstream 506341 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 607871 47132135 ~ 47151549 (+)
G895652 LOC106603032 other downstream 668752 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 682234 47216407 ~ 47217071 (+)

Expression


Co-expression Network