G895517


Basic Information

Item Value
gene id G895517
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47043994 ~ 47044294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1018882
gttcatattcatttttatacaacacaatactgttttaacttaggaagagttcagaaatcaatatttggtggaataaccctgattttcaatcacagctttcatgcgtcttagcatgctctccaccagtctttcaaGTTGATGTTGTGTGACTTTATGCCACTCCTGGCGCAAAAAGCAGCTCGGCTTTGTTTGATGCCTTTTGaccatcttcctcttgatcacattccagaggttttcaatggggttcaggtctggagattgggctggccatgacagggtcttgatctggtggtcctccatT

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1018882 True 301 lncRNA 0.43 1 47043994 47044294

Neighbor

gene id symbol gene type direction distance location
LOC110533128 LOC106603037 coding upstream 9489 47031429 ~ 47034505 (+)
LOC110534113 LOC106603039 coding upstream 27782 47009349 ~ 47016212 (+)
LOC110534111 LOC106603040 coding upstream 81451 46916136 ~ 46962543 (+)
LOC110534110 LOC106603042 coding upstream 149003 46888000 ~ 46894991 (+)
LOC110534109 NA coding upstream 176390 46864047 ~ 46867604 (+)
LOC110534117 UBE2D2 coding downstream 79575 47123869 ~ 47127973 (+)
LOC110511048 LOC106603033 coding downstream 87841 47132135 ~ 47151549 (+)
LOC110534120 LOC106563662 coding downstream 214947 47259241 ~ 47374572 (+)
LOC110533129 NA coding downstream 365093 47409387 ~ 47420005 (+)
LOC118936698 NA coding downstream 376533 47420827 ~ 47426481 (+)
G895492 NA non-coding upstream 52551 46991163 ~ 46991443 (+)
G895491 NA non-coding upstream 53450 46990102 ~ 46990544 (+)
G895487 NA non-coding upstream 58634 46985044 ~ 46985360 (+)
G895475 NA non-coding upstream 72187 46971453 ~ 46971807 (+)
G894596 NA non-coding upstream 92528 46950976 ~ 46951466 (+)
G895516 NA non-coding downstream 562 47044856 ~ 47045118 (+)
G895522 NA non-coding downstream 10722 47055016 ~ 47055580 (+)
G895527 NA non-coding downstream 11822 47056116 ~ 47056523 (+)
G895617 NA non-coding downstream 78233 47122527 ~ 47122815 (+)
G895621 NA non-coding downstream 85727 47130021 ~ 47130240 (+)
G895515 NA other upstream 1211 47040514 ~ 47042783 (+)
G894437 LOC106603023 other upstream 343454 46627292 ~ 46700540 (+)
G894204 LOC100136012 other upstream 926051 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 1142183 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 1400438 45622164 ~ 45654911 (+)
G895652 LOC106603032 other downstream 158631 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 172113 47216407 ~ 47217071 (+)
G896043 NA other downstream 865422 47909716 ~ 47910975 (+)
G896217 NA other downstream 1190888 48235182 ~ 48235616 (+)

Expression


Co-expression Network