G895724


Basic Information

Item Value
gene id G895724
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47388841 ~ 47404280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1019101
AAGGTCTACTATTTTTTATTGTCTTAGTATGAAGAGCATCCTGAAAAGACGGGGAGGTGTGGCTTTCTTGGCCACAGTTGTTTCTTGGCCATTGTTGATTACCGTAAGGTGAAACAAAAATACGTCTGGGAAGGCCATTGTGTGGGTTTCTCAACAACAAATCACTGACACTTCCTCCGTCTGTGGAGCAGCTGTGTTATCCACGGCTCTTCTTCTCTGGTTCCCAGGCTGACCCTCAGAGGTCTTCAAATGGACTACACGCATACGTCAATTTCTTTAGGTCAAAACAAAACATATACACAGGTTGACAAATATACAGCTGTTTAACATTGGTTTTCTATCTGATTGAGTAAAAAGACTAGATACACATCAATATATTAATGCAGGCCTATGTCCCCGAAGAGAGTTTGCACGGAGGTTGTCCTTTAGCCACCATACATATTAGATTGATGGGGTGGGCGGATGTAGGAGGAGCAAGCATGTCACAATCATGGCAGTTCCCTAAGAAGGATGGTTCTCATCATTGACTAGAGCCTATGCTATGAGAATGCATGTACAATATTGACGGCATTCAAGCCAAGATAAATGCATATAGCTCAAACTACAGAAAAAACACAAACTCTTTCAGCAACGCATCCAAGTCCACATAACCAAACGCAAAAGCCACCACACAGCTCTTATGGCCTCTCCAGAACAACAGCAGTTTAGACCGTAACACATGCATGGTCTGATCAGTGACAGAACAGTGAATATCGGTCAATTCATGTCTCTGTTGTCACTAAACAGAAGGCATTGCCTCCTTTCTCATCTACTGCTATTGTGGGCTCAATGCATGTCATGATAAGGGGTTTGAAGAGTGATGGTGTGAGCCATGTGAACAGCCAGAACTCTATGTATATGCTACAGACTAGTAAAACAGACATTCATCAATGAAGTCAttaaacccactgggcacagacgtccaTTCAACGTCTATTCCGCGTTGGTGCCGCGTCATTTGGTTGAAATggcgtggaaacaacattgaaaAGGGCGTGGAATCGACATTGGTTCTACCAATGTGCGCCCAGTGGGAAGTGCTTTAAGAAATGATTGTCCGTTTCCCTCAGGCATATCTAATGGTGCTTATTgtggggtggtggggtcagtGGTGAAGAAGGGAACTGTGCGGAGTGGACGCACAGCTTATTTGAGTTGCTCGTCGGGGGCAGGGATCTTCTCCAGGCTGGGCTCCACGCCCCAGATCTCCCGGGCGTACTGGGAAATGGTGCGGTCGCTGGAGAATTTACCACAGCCTGCAATGTTATGGATCACCATCTTGGTCCATTCCTTGGGATTCTTGTACAGTACATGATGTACTCCAATGACTTCCAGTAATCAACACCC

Function

NR:

description
glycogen phosphorylase, muscle form-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1019101 True 1386 lncRNA 0.46 2 47388841 47404280

Neighbor

gene id symbol gene type direction distance location
LOC110534120 LOC106563662 coding upstream 14269 47259241 ~ 47374572 (+)
LOC110511048 LOC106603033 coding upstream 237497 47132135 ~ 47151549 (+)
LOC110534117 UBE2D2 coding upstream 260868 47123869 ~ 47127973 (+)
LOC110533128 LOC106603037 coding upstream 354336 47031429 ~ 47034505 (+)
LOC110534113 LOC106603039 coding upstream 372629 47009349 ~ 47016212 (+)
LOC110533129 NA coding downstream 5107 47409387 ~ 47420005 (+)
LOC118936698 NA coding downstream 16547 47420827 ~ 47426481 (+)
LOC110533130 LOC106602987 coding downstream 22338 47426618 ~ 47849279 (+)
LOC110534124 LOC106602984 coding downstream 453210 47857490 ~ 47887278 (+)
LOC110534126 LOC106602983 coding downstream 497279 47901559 ~ 47905308 (+)
G895687 NA non-coding upstream 4607 47383066 ~ 47384234 (+)
G895709 NA non-coding upstream 45271 47292167 ~ 47343570 (+)
G895717 NA non-coding upstream 82123 47301851 ~ 47306718 (+)
G895663 NA non-coding upstream 164324 47224278 ~ 47224517 (+)
G895660 NA non-coding upstream 170724 47217883 ~ 47218117 (+)
G895845 NA non-coding downstream 118612 47522892 ~ 47545264 (+)
G895839 NA non-coding downstream 120414 47524694 ~ 47597056 (+)
G895856 NA non-coding downstream 201108 47605388 ~ 47616102 (+)
G895862 NA non-coding downstream 202074 47606354 ~ 47614212 (+)
G895863 NA non-coding downstream 202940 47607220 ~ 47613316 (+)
G895658 LOC106603032 other upstream 171770 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 183999 47202925 ~ 47204842 (+)
G895515 NA other upstream 346058 47040514 ~ 47042783 (+)
G894437 LOC106603023 other upstream 688301 46627292 ~ 46700540 (+)
G896043 NA other downstream 505436 47909716 ~ 47910975 (+)
G896217 NA other downstream 830902 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 1271977 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1873422 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 2026119 49426785 ~ 49432958 (+)

Expression


Co-expression Network