G896826


Basic Information

Item Value
gene id G896826
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47873629 ~ 47950688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1020340
GTCCTGTCCCGTCCTGTCCCCGGTCCCGGACCTTCGACCAGATCCTGATGCTGCTTTGGTGTTTGTAGATCCGACTGACAATACCATATGTATGCACTATGGCCAACACAGAAGGGATACAGCGAAAAGGGTATGCTTTCTCAGCCCTAGTAAAGAACACGTTTTCATCTTAAAATTCAGTCAATGAGTTCCTCAGCCCTAGTAAAGAACACACTTTCATCTTAAAATTCAGTTAACGAGTTTGAGTTTATTATCAGCACCAGCAAAGAACACACTTTCATCTTCGAATTCAGTTAATGAACACACTTTCATTGATAACTACAGTTCAGCAAACTATTTTTTCGGACACATGATCATGTTCAGTGCCAGAACGACATAATCACATGATCATGAAACTTTGTTAAGAACGCACACCTTCAGCGCTGTCTCTATTTGTCTAAAAACTTAAGTGGTGCATAATCTTGTGTGTCATCCCCCAGATGCTTCTTCAGAAATGGCACAACTTTAAAAAGGTTGATGTGGAAATCTCTGGAGTCATCGCTAGACTCCTGTTGGATATCGTTGTCACCATCAGGGCACAGATTTTTGGTGCCCCAGCTGATCAATCCAACCTTTGAAGAATGGAAGCGGTGTCAGTACTAATTCATGTACATCAACTGTAGATTACAGGAGACCCCAGAGgtttacaaatacattttgcaTAAATAAATATGTAAAATCCCATGTACACAAAAGGATAGAGCAAAAAGTACGAGGCAAATGCACAGAAAGTTGCCACTTTCTTACTGCTCGCCTCTGTAGGTGGTGTCTAGTGCCGATGTATCTGCTGTAAATAAGTGTCTCTAACCTGGATTGTGCGATAATCATCATAGTTCTTAAACAGAGCACCACCGGAGTcacctgtgtacacacacacacacacacacacacacacacacacacacaaatacacacacacacacacacacatctcattgTCATCTACatcattgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatttgtatgtgacaaataaaatttgatcttATTCATCACAGAGATACTGATGAGCTGTCCATtgaccagacagagagcagaaaAAAGTAGTGTTGTCACGATAGCAGAATGTTGACTTCGATACCGATAACAGGTTTAGTATCACGATGATAAAACGATaccacataaaaataaaaaaaccgGGGATGCACTGTGAGATGGTCAGTTCTGGTTACTTTTTTGAAAAGGAGATTCAACTCCAAAATGACCACAAATCAAATGAAACAACCAATCCCTGATGCATTCTGTTTATGTCTTAAAATCAACTTGGGTAaaaacataggtacagcagaccCCCTTGTTGTATgagacactttttttttaaaaatgtgccTTTGGAGGACATGCAATTCAATACTCATCTTTAAAACAAAAAGTAGTTAGGTCAACAGAgttcatctttaaaaaaaaaaaggaaatagaggaactaacagtacagatagaATAGCATTGTAAACTTATATGCTGACCGGACATACGCGTG

Function

NR:

description
complement factor Bf-2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1020340 True 1568 lncRNA 0.40 2 47873629 47950688

Neighbor

gene id symbol gene type direction distance location
LOC110534123 pygma coding downstream 470218 47388839 ~ 47403411 (-)
LOC110534122 NA coding downstream 489234 47383048 ~ 47384395 (-)
LOC110534119 LOC107684715 coding downstream 616012 47248137 ~ 47257617 (-)
LOC110534118 LOC106603020 coding downstream 639021 47203241 ~ 47234608 (-)
LOC110534116 LOC106603034 coding downstream 751993 47068699 ~ 47121636 (-)
LOC110534130 NA coding upstream 1276 47951964 ~ 47957491 (-)
LOC110534132 LOC100194673 coding upstream 39624 47990312 ~ 48010716 (-)
LOC110534135 LOC106602978 coding upstream 65197 48012083 ~ 48021620 (-)
LOC110534134 LOC106602977 coding upstream 77889 48028577 ~ 48038667 (-)
LOC110534136 LOC106602975 coding upstream 96199 48046887 ~ 48049905 (-)
G896813 NA non-coding downstream 6560 47866619 ~ 47867069 (-)
G896648 LOC106602987 non-coding downstream 216755 47656333 ~ 47656874 (-)
G896596 NA non-coding downstream 304679 47513049 ~ 47568950 (-)
G896592 NA non-coding downstream 307691 47564585 ~ 47565938 (-)
G896590 NA non-coding downstream 310283 47561570 ~ 47563346 (-)
G896842 NA non-coding upstream 38444 47989132 ~ 47989347 (-)
G896913 NA non-coding upstream 71386 48022074 ~ 48022533 (-)
G896914 NA non-coding upstream 72362 48023050 ~ 48023301 (-)
G896923 NA non-coding upstream 93508 48044196 ~ 48044522 (-)
G894917 NA other downstream 1955290 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2123298 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 2857582 45011329 ~ 45017446 (-)
G893541 NA other downstream 3104557 44768450 ~ 44769072 (-)
G896841 NA other upstream 37073 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 931039 48881449 ~ 48907973 (-)
G899409 NA other upstream 2205504 50156192 ~ 50156902 (-)
G899421 NA other upstream 2231708 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 2514779 50463950 ~ 50482534 (-)

Expression


Co-expression Network