G896044


Basic Information

Item Value
gene id G896044
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47907239 ~ 47909591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1019491
ccagcttcatgaggaatgctttttcaacagtcttgaaggagttcccacatatactgagcacttgttgggtgcttttccttcactctgtggttccaactcatcccaaagcatctcaactgggttgaggtcgggtgattgtggaggccaggtctgaTGCACCACTTCAATTCCTATATGTTCATCAACCAATTCAACTGTAACAAAGCAAAACACTTTGtccgtttctaagaatttgtaaggttcTTATTTGCATGAAACAGGCAAAGATCAGTCTCAAAATTAATCAATAGCGTTTATTCCCGAGAGCTCTGAACATAATCACATGTACATTAGTTTATATATCACACATAGCGTCATGTCTTACaaaaatgtccctcctcctcctggatCATGACAAAGCTACTTTTCAATTCAATTCCAACACATAGCTTATCTTCTGCTACCATGTGTTACACAATCTACTGCACGCCCAACGGTTTCTCCCCTCCCTGGTTGGTGACCAGACATCTTTCCTGTTGTTAGTTTCACTGTGATCACTAGTTGTCTGTTGACCCTTCCTCTTGGCCCATGTACCAACATATTCTTCAACAGACAACAGACCACTCTGTGAGTTATAACTCTACGCCAAATGTATACATTATTtggtcattattgataaaaaatccttcaacagcactccatcactctccttggtcaaatagccccaacacagcttggaggtgtgttttgggtcattgtcctgctgaaaaacaactgatagtcccactaagcgcaaaccagaggggatggcgtattgctacagaatgctgtgttagccatgctggttaagtgtgccttgaattctaaataaatcacagacagtgtcaccagcaaagcaccccaacaacatcacacttcctcctccatgcttcacggtgggaatcacacatgcagagatcatccgttcacctactctgcatcttacaaagacacggcggttggaaccaagaatctcaaatttggactcgtcaaaggacagatttccaccggtctaaggtccattgcttgtgtttcttggcctaagcaagtcttttcttattattggtatcctttagtagtggtttcttcacgcagtctcctctgaacagttgatgttgagatgtgtctgttacttaaactctgtgaagcatttatttgggctgcaatctgaggtgcagttaactctaatgactttttcctctgcagcagaggtaactctgggtcttcctttcctgtggcggtcctcgtgagagccagtgtCATCATGGCTTTTGatggtattttttatttatttaacctttatttaaccaggagattaaaatatatttttcaagagcgccctggccaagataggcagcaccaagtcattacaaaaaaaattacagactgacaacatgaaaaactacaagtaatctagtaaaaaccattgaattcacaagagtataaaacagcgactgcagttgaagaaactcaaagttcatgaaattttccggattgactgaccttcatgtcttaaagtaatgatgggctgtcatttctctttgcttatttgagctgttcttgccataatatggatttgattttttaccaaatagggctggctatcatctgtataccacccctaccttgtcacaacacaactgattggctcaaacgcaattaaggaaataaattacacaaattaacttttaacatggcacaactgttaattgaaatgcattccaggtgactacctcatgaagccggttgagagaatgctaagagtgtccatagctgtcatcatggcaaagggtggctactttgaggaatctcaaatataaaataaatgttttggttactacatcattccatatgtgttattcatagtttgtcttcactattattctacactgtagaaaatagtcaaaataaagaaaaaccttggaatgaacaggtttgtccaaacttttgactggtattgtacgtTTGCTTTGGCATTAATGAATATGTGTATAACCCATTTCTATTCAGCGAGTAACACAtaaatacactcttagaaaaaaatagttccaaaagggttatttggctgtccccataggttcagGATAGCAGTCTCTTTGTATTAGAGTGTCACAAGACTTACTTTGGTTAGAgcggtacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttatcccacttaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1019491 True 2215 lncRNA 0.40 2 47907239 47909591

Neighbor

gene id symbol gene type direction distance location
LOC110534126 LOC106602983 coding upstream 1931 47901559 ~ 47905308 (+)
LOC110534124 LOC106602984 coding upstream 19961 47857490 ~ 47887278 (+)
LOC110533130 LOC106602987 coding upstream 57960 47426618 ~ 47849279 (+)
LOC118936698 NA coding upstream 480758 47420827 ~ 47426481 (+)
LOC110533129 NA coding upstream 487234 47409387 ~ 47420005 (+)
cfb LOC106602980 coding downstream 27772 47937363 ~ 47950461 (+)
LOC110534131 LOC106602979 coding downstream 53844 47963435 ~ 47987449 (+)
rin1a LOC106602976 coding downstream 112467 48022058 ~ 48029576 (+)
trnas-gcu-8 NA coding downstream 132461 48042052 ~ 48042133 (+)
LOC110534142 mcf2 coding downstream 233537 48143128 ~ 48158290 (+)
G895855 NA non-coding upstream 288503 47614295 ~ 47618736 (+)
G895856 NA non-coding upstream 291137 47605388 ~ 47616102 (+)
G895862 NA non-coding upstream 293027 47606354 ~ 47614212 (+)
G895863 NA non-coding upstream 293923 47607220 ~ 47613316 (+)
G895839 NA non-coding upstream 310183 47524694 ~ 47597056 (+)
G896098 NA non-coding downstream 48873 47958464 ~ 47958684 (+)
G896052 NA non-coding downstream 78126 47987717 ~ 47989065 (+)
G896056 NA non-coding downstream 79542 47989133 ~ 47989348 (+)
G896122 NA non-coding downstream 101270 48010861 ~ 48011074 (+)
G896055 NA non-coding downstream 102469 48012060 ~ 48017903 (+)
G895658 LOC106603032 other upstream 690168 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 702397 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 755690 47132135 ~ 47151549 (+)
G895515 NA other upstream 864456 47040514 ~ 47042783 (+)
G894437 LOC106603023 other upstream 1206699 46627292 ~ 46700540 (+)
G896043 NA other downstream 125 47909716 ~ 47910975 (+)
G896217 NA other downstream 325591 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 766666 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1368111 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1520808 49426785 ~ 49432958 (+)

Expression


Co-expression Network