G896052


Basic Information

Item Value
gene id G896052
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47987717 ~ 47989065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1019501
tttttatcataagtacacttcaactgtgagagatggaatctaaaacaaaaatgcagaagatcattgtatgattaagtaattcatttgcattttattgtatgatttttaagtaattcatttgcattttattgcatgacaattatttgatacatcagtaaagcagaacttaatatttggtacagaaacctgtgtttgcaattacagagatcatacgtttcctgcaGTTCTTCACCAGGTTTGTATACACTGCAGCAGGgtttttggcccactcctccatacagaccttctccagatccttcaggtttcagggctgtcgctgggcaatacggactttcagctccctccaaagaacTTCTATtgagttcaggtctggagactggctaggccactccttagttgcccggctgtgtgtttcgggtcgttgtcatgctggaagacccagccatgacccatcttcaatgctcttactaagGGAAGGAGGtggttggccaagatctcgcgatacatggccccatccatcctcccttcaatacggtgcagtcgtcctgtcccctttgcagaaaagcatagaatgatgtttccacctccatgcttcacggttgggagggtgttcttgaggttgtactcatccttcttcctccaaacacggcaagtggagtttagaccaaaaagctctatttttgtctcatcaggccACATGAccgtctcccattcctcctctggatcatccagatggtcattggcaaacttcagacgggcctggacatgcgctggcttgagcagggggaccttgcgtgcgctgcaggattttaacacatggcggcgtagtgtgttactaatggttctttgagactgtggtcccagctctcttcaggtcattgaccaggtcctgccgtgtagttctgggctgatccctcaccttcctcatgaccattgatgccccacgaggtgagatcttgcatggagccccagattgaggtgattgaccgtcatcttgaacttcttccaatttctaataattgcaccaacagttgttgctttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattttatccccgatgtccttacacagctctttggtcttggccattgtggagagattggagtctgtttgagtgtgtgtacaggtgtcttttatacaggtaacaagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaactaacaggtctgtgagagctggaattcttactggttggtaggtgatcaaattcttatgtcatgcaataaaatgcaaattaatta

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1019501 True 1349 lncRNA 0.45 1 47987717 47989065

Neighbor

gene id symbol gene type direction distance location
LOC110534131 LOC106602979 coding upstream 268 47963435 ~ 47987449 (+)
cfb LOC106602980 coding upstream 37256 47937363 ~ 47950461 (+)
LOC110534126 LOC106602983 coding upstream 82409 47901559 ~ 47905308 (+)
LOC110534124 LOC106602984 coding upstream 100439 47857490 ~ 47887278 (+)
LOC110533130 LOC106602987 coding upstream 138438 47426618 ~ 47849279 (+)
rin1a LOC106602976 coding downstream 32993 48022058 ~ 48029576 (+)
trnas-gcu-8 NA coding downstream 52987 48042052 ~ 48042133 (+)
LOC110534142 mcf2 coding downstream 154063 48143128 ~ 48158290 (+)
LOC110534145 fgf13 coding downstream 179937 48169002 ~ 48187520 (+)
LOC110534146 zic3 coding downstream 212320 48201242 ~ 48205374 (+)
G896098 NA non-coding upstream 29033 47958464 ~ 47958684 (+)
G896044 NA non-coding upstream 78126 47907239 ~ 47909591 (+)
G895855 NA non-coding upstream 368981 47614295 ~ 47618736 (+)
G895856 NA non-coding upstream 371615 47605388 ~ 47616102 (+)
G896056 NA non-coding downstream 68 47989133 ~ 47989348 (+)
G896122 NA non-coding downstream 21796 48010861 ~ 48011074 (+)
G896055 NA non-coding downstream 22995 48012060 ~ 48017903 (+)
G896060 LOC106602978 non-coding downstream 28977 48018042 ~ 48018912 (+)
G896124 LOC106602978 non-coding downstream 31242 48020307 ~ 48020662 (+)
G896043 NA other upstream 76742 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 770646 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 782875 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 836168 47132135 ~ 47151549 (+)
G895515 NA other upstream 944934 47040514 ~ 47042783 (+)
G896217 NA other downstream 246117 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 687192 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1288637 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1441334 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 2045925 50034990 ~ 50037685 (+)

Expression


Co-expression Network