G896146 (f9)


Basic Information

Item Value
gene id G896146
gene name f9
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48098136 ~ 48160174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1019604
GGGGAGGGGGCTGgggggggggggggggtcttggacCTCTCAGACATCAGGCTCAGAGTTGGAACCAATGCTTCTCAGCCCAGTGACATTGGAGATCCACGGGAAGTAACGTGACACACGTGTGTAGATGCCATACTTCCCTTCCTTGGCGCACTCCTCCCCCCAGCTCACGATGCCTGTCAGAAACCAAGTGTCCCGGTACTGGGTGACATGGGGACCGCCACTGTCCCCCTGGCATGAATCCTTCTGCTCGCTGCGGTAACCGGCACAAAACATGAAGCGGGACACCCGTTCTGCGCTGCTGCCCTTGCACTCGGTCCTGTCCACGTAGGGCACCTCTACCTTCTGCAGTATGGAGGACTCAGGGCCCTGGAAGCGCATCCTGCCCCAGCCGCTGACCACCGAGATAGAGGCCTCCCTCAGCAGCGTCTCAGTGAAGTCCTTGGGCCCCAGACAGATGGGGAGACTGTAGTCAGAGAGGCGTGCGGGCGTGCGGAGCTTGAGCAGGGCTATGTCGTGGTTGTACTGACTTATCTTGGCGTCGTATCTCGGGTGCATGTGATGCTCAGCCACAGCGTGGTCATGCTCCGTCCCCTCCTTGACCTGCATGTTGTGC
>TU1019601
tttttttctttttttTTTCCCGGATCCCTTTTAATTCATCAACAAAGAGTAAATCAGCCCAGTTAAACATTACACAATGGTAATCATCCAAAACGTTAAGTAACGTaagggcaggggggggggggggggtcttggacCTCTCAGACATCAGGCTCAGAGTTGGAACCAATGCTTCTCAGCCCAGTGACATTGGAGATCCACGGGAAGTAACGTGACACACGTGTGTAGATGCCATACTTCCCTTCCTTGGCGCACTCCTCCCCCCAGCTCACGATGCCTGTCAGAAACCAAGTGTCCCGGTACTGGGTGACATGGGGACCGCCACTGTCCCCCTGGCATGAATCCTTCTGCTCGCTGCGGTAACCGGCACAAAACATGAAGCGGGACACCCGTTCTGCGCTGCTGCCCTTGCACTCGGTCCTGTCCACGTAGGGCACCTCTACCTTCTGCAGTATGGAGGACTCAGGGCCCTGGAAGCGCATCCTGCCCCAGCCGCTGACCACCGAGATAGAGGCCTCCCTCAGCAGCGTCTCAGTGAAGTCCTTGGGCCCCAGACAGATGGGGAGACTGTAGTCAGAGAGGCGTGCGGGCGTGCGGAGCTTGAGCAGGGCTATGTCGTGGTTGTACTGACTTATCTTGGCGTCGTATCTCGGGTGCATGTGATGCTCAGCCACAGCGTGGTCATGCTCCGTCCCCTCCTTGACCTGCATGTTGTGC
>TU1019602
tttttttcttttttttTTTCCCGGATCCCTTTTAATTCATCAACAAAGAGTAAATCAGCCCAGTTAAACATTACACAATGGTAATCATCCAAAACGTTAAGTAACGTaagggcaggggggggggggggggtcttggacCTCTCAGACATCAGGCTCAGAGTTGGAACCAATGCTTCTCAGCCCAGTGACATTGGAGATCCACGGGAAGTAACGTGACACACGTGTGTAGATGCCATACTTCCCTTCCTTGGCGCACTCCTCCCCCCAGCTCACGATGCCTGTCAGAAACCAAGTGTCCCGGTACTGGGTGACATGGGGACCGCCACTGTCCCCCTGGCATGAATCCTTCTGCTCGCTGCGGTAACCGGCACAAAACATGAAGCGGGACACCCGTTCTGCGCTGCTGCCCTTGCACTCGGTCCTGTCCACGTAGGGCACCTCTACCTTCTGCAGTATGGAGGACTCAGGGCCCTGGAAGCGCATCCTGCCCCAGCCGCTGACCACCGAGATAGAGGCCTCCCTCAGCAGCGTCTCAGTGAAGTCCTTGGGCCCCAGACAGATGGGGAGACTGTAGTCAGAGAGGCGTGCGGGCGTGCGGAGCTTGAGCAGGGCTATGTCGTGGTTGTACTGACTTATCTTGGCGTCGTATCTCGGGTGCATGTGATGCTCAGCCACAGCGTGGTCATGCTCCGTCCCCTCCTTGACCTGCATGTTGTGC
>TU1019606
ggcccgggggggggggggggggggggggggggggggggggggtcttggacCTCTCAGACATCAGGCTCAGAGTTGGAACCAATGCTTCTCAGCCCAGTGACATTGGAGATCCACGGGAAGTAACGTGACACACGTGTGTAGATGCCATACTTCCCTTCCTTGGCGCACTCCTCCCCCCAGCTCACGATGCCTGTCAGAAACCAAGTGTCCCGGTACTGGGTGACATGGGGACCGCCACTGTCCCCCTGGCATGAATCCTTCTGCTCGCTGCGGTAACCGGCACAAAACATGAAGCGGGACACCCGTTCTGCGCTGCTGCCCTTGCACTCGGTCCTGTCCACGTAGGGCACCTCTACCTTCTGCAGTATGGAGGACTCAGGGCCCTGGAAGCGCATCCTGCCCCAGCCGCTGACCACCGAGATAGAGGCCTCCCTCAGCAGCGTCTCAGTGAAGTCCTTGGGCCCCAGACAGATGGGGAGACTGTAGTCAGAGAGGCGTGCGGGCGTGCGGAGCTTGAGCAGGGCTATGTCGTGGTTGTACTGACTTATCTTGGCGTCGTATCTCGGGTGCATGTGATGCTCAGCCACAGCGTGGTCATGCTCCGTCCCCTCCTTGACCTGCATGTTGTGC
>TU1019607
ggcccggggggggggggggggggggggggggggggggggggcggtcttggacCTCTCAGACATCAGGCTCAGAGTTGGAACCAATGCTTCTCAGCCCAGTGACATTGGAGATCCACGGGAAGTAACGTGACACACGTGTGTAGATGCCATACTTCCCTTCCTTGGCGCACTCCTCCCCCCAGCTCACGATGCCTGTCAGAAACCAAGTGTCCCGGTACTGGGTGACATGGGGACCGCCACTGTCCCCCTGGCATGAATCCTTCTGCTCGCTGCGGTAACCGGCACAAAACATGAAGCGGGACACCCGTTCTGCGCTGCTGCCCTTGCACTCGGTCCTGTCCACGTAGGGCACCTCTACCTTCTGCAGTATGGAGGACTCAGGGCCCTGGAAGCGCATCCTGCCCCAGCCGCTGACCACCGAGATAGAGGCCTCCCTCAGCAGCGTCTCAGTGAAGTCCTTGGGCCCCAGACAGATGGGGAGACTGTAGTCAGAGAGGCGTGCGGGCGTGCGGAGCTTGAGCAGGGCTATGTCGTGGTTGTACTGACTTATCTTGGCGTCGTATCTCGGGTGCATGTGATGCTCAGCCACAGCGTGGTCATGCTCCGTCCCCTCCTTGACCTGCATGTTGTGCTCCCCTGGCGAGAGGCATTGTGATCAGATGAACATTATTTTGAACGAATGAAGCACAAATACCAAATAGGCAGTCACTCCTACTTGGTTTGACTCACCCACTCTGATGAAGAAGGTTCCAATCTTGCCCTCGTTCAGGCAGTGGGCAGCGGTGATGACCCACATCTCACTGAGGAGGGTGCCACCACAGAAGTTCTGCCCGGTCAGCTTGCTCATCAGGGACACCTGGCAGTGTCCCAGAGGTTAGCACAGACAACCGCAGTCTAAACACATTGACTGGAGGGGCTTAgttacactcacacactcacacaactggCCTACCTGCCAGGGGATCTCCCCAGGTTTCACTGTGTTTCCCCCAACGATGCGCTGGTCGCTGGATGTCTCTTCCTGGATGGTGGGCAGTGTTGGGAAGAAGGCCCAGGAGGGCAAGTCCCCCAGCACTGAGGAAGAGTGGCTGCTACTGGTGCTGCTGACGCGGtggggggttgtggtggtggCATTGACCGCAAGAGAATCCAAGGTGTTGTTCACAGAGGCCTCCGGTGTCTCAGTGATGTTGAGGGCGTTGTCGTCGGACTGCCGAGTCTGATCAACATTTACGGCTGTGATGATCGACCGAGAGGACAGCGTTGCGCTTATAGCCTTGCCAAGATGACCACAGGGGAATGGTCTTCTGGTTCGCAGGTGGTCTTGTCCGGAGCCAGTCTATACCCTGTGGCACAGTCGCACACTGCATGCTGGGCGTTCAGCACACAGAAGTGGGAGCAGCCACCGTTGTTAATGTCACACTGCTTAGCCATCTCTGAGTAGGGAGAATCCA
>TU1019608
ggcccggggggggggggggggggggggggggggggggggggcgggggggggggtcttggacCTCTCAGACATCAGGCTCAGAGTTGGAACCAATGCTTCTCAGCCCAGTGACATTGGAGATCCACGGGAAGTAACGTGACACACGTGTGTAGATGCCATACTTCCCTTCCTTGGCGCACTCCTCCCCCCAGCTCACGATGCCTGTCAGAAACCAAGTGTCCCGGTACTGGGTGACATGGGGACCGCCACTGTCCCCCTGGCATGAATCCTTCTGCTCGCTGCGGTAACCGGCACAAAACATGAAGCGGGACACCCGTTCTGCGCTGCTGCCCTTGCACTCGGTCCTGTCCACGTAGGGCACCTCTACCTTCTGCAGTATGGAGGACTCAGGGCCCTGGAAGCGCATCCTGCCCCAGCCGCTGACCACCGAGATAGAGGCCTCCCTCAGCAGCGTCTCAGTGAAGTCCTTGGGCCCCAGACAGATGGGGAGACTGTAGTCAGAGAGGCGTGCGGGCGTGCGGAGCTTGAGCAGGGCTATGTCGTGGTTGTACTGACTTATCTTGGCGTCGTATCTCGGGTGCATGTGATGCTCAGCCACAGCGTGGTCATGCTCCGTCCCCTCCTTGACCTGCATGTTGTGC

Function

symbol description
f9 Enables calcium ion binding activity and endopeptidase activity. Involved in blood coagulation and zymogen activation. Located in extracellular space. Part of collagen-containing extracellular matrix. Implicated in X-linked thrombophilia due to factor IX defect; X-linked warfarin sensitivity; and hemophilia B. Biomarker of type 2 diabetes mellitus.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1019604 False 616 lncRNA 0.61 2 48098136 48159242
TU1019601 False 717 lncRNA 0.56 2 48129669 48159242
TU1019602 False 718 lncRNA 0.56 2 48129669 48159242
TU1019606 False 630 lncRNA 0.62 2 48154507 48159242
TU1019607 False 1454 lncRNA 0.58 3 48154507 48160174
TU1019608 True 641 lncRNA 0.63 2 48154507 48159242

Neighbor

gene id symbol gene type direction distance location
trnas-gcu-8 NA coding upstream 56003 48042052 ~ 48042133 (+)
rin1a LOC106602976 coding upstream 68560 48022058 ~ 48029576 (+)
LOC110534131 LOC106602979 coding upstream 110687 47963435 ~ 47987449 (+)
cfb LOC106602980 coding upstream 147675 47937363 ~ 47950461 (+)
LOC110534126 LOC106602983 coding upstream 192828 47901559 ~ 47905308 (+)
LOC110534145 fgf13 coding downstream 8828 48169002 ~ 48187520 (+)
LOC110534146 zic3 coding downstream 41211 48201242 ~ 48205374 (+)
LOC110534150 snx12 coding downstream 134011 48294185 ~ 48305120 (+)
LOC110534152 LOC106602957 coding downstream 147777 48307951 ~ 48321819 (+)
rab38c LOC106602959 coding downstream 173155 48333329 ~ 48336841 (+)
G896058 LOC106602975 non-coding upstream 48285 48046890 ~ 48049851 (+)
G896132 NA non-coding upstream 54155 48043768 ~ 48043981 (+)
G896130 NA non-coding upstream 55261 48042651 ~ 48042875 (+)
G896128 NA non-coding upstream 56374 48041510 ~ 48041762 (+)
G896124 LOC106602978 non-coding upstream 77474 48020307 ~ 48020662 (+)
G896210 NA non-coding downstream 57876 48218050 ~ 48218407 (+)
G896212 NA non-coding downstream 60194 48220368 ~ 48220649 (+)
G896226 LOC106602963 non-coding downstream 87055 48247229 ~ 48248088 (+)
LOC110534159 LOC106602952 non-coding downstream 341720 48490263 ~ 48503743 (+)
G896043 NA other upstream 187161 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 881065 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 893294 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 946587 47132135 ~ 47151549 (+)
G895515 NA other upstream 1055353 47040514 ~ 47042783 (+)
G896217 NA other downstream 75008 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 516083 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1117528 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1270225 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1874816 50034990 ~ 50037685 (+)

Expression


Co-expression Network