G897425 (LOC106602952)


Basic Information

Item Value
gene id G897425
gene name LOC106602952
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48498836 ~ 48501408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1020994
TCTTTGGAAGCTGCGGGCCGGGGTCCGTTCAGGGATGGGTCTGCAGGTGTGGGTCCGTGGTGGGGCTGCATGCGGCCCAGGGAATGCTGGCGGCCTTGAGCTGCAGTGGTAGCAGCAGCAGGGGGGCGGTAGGCCCGGTCCAGGGACTGGGTCTGGTTGGGGCCTGTTAGGTGCTCCTTCCCATCAGGACCCAGCACAACTCCCTCCTGGGGTGGGTGGTTAGGGCTGGCAGGGTAGGACTGTTCATCAGACATACCAGACCTGTCTGGAGAGAGGGATCCCTCAGAGGACATGCCATGGTAGGGTGAAGGCGTGAGGCGGGTGTCTGGACGGAACTCCTTGTCGTAGGCCATCATGTTCCACTCCTGACGGCGGTTCCGGGCCTTCCTCACCTTCTTCACCTCCCGGCTGGGGTCCTCCACCTGTTTCTGCTCCTTGTCACCCGCCTTCTGCTTCCTCTTCTCCTTCCGCTTGTTTTCTGTTGCTTGGATCATCTTCTCCTTCCACAGGTTAAAGAAGTAGGATGGGTCTGTGTAGAACTTAAGGCCATCCTTTTTGTCATCCTGTAGGGGCTGAGGATGTTTAGGGGTGGAGGTTTGTCACAGCGATGGTACATCTCCATGACGGGGTTGAGGATGGAGTTCCTGGACACCACCTGCTGGTCCTGGATGGTGGAGCTCTTGAAAGCCTTCCTCATGTTGATGTCCTGCAGCGAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1020994 True 717 lncRNA 0.59 4 48498836 48501408

Neighbor

gene id symbol gene type direction distance location
LOC110533134 NA coding downstream 66092 48415517 ~ 48432744 (-)
LOC110534153 LOC106602956 coding downstream 111776 48355041 ~ 48387060 (-)
LOC118936700 LOC106602960 coding downstream 165659 48330443 ~ 48333177 (-)
fhl1b fhl1 coding downstream 214776 48263311 ~ 48284060 (-)
LOC118936699 LOC106602963 coding downstream 235965 48260326 ~ 48262871 (-)
LOC110534161 LOC106602951 coding upstream 2164 48501662 ~ 48508644 (-)
LOC110534163 atg4a coding upstream 35005 48536413 ~ 48544938 (-)
alg13 LOC106602945 coding upstream 124594 48626002 ~ 48634602 (-)
dacha dach2 coding upstream 165298 48666706 ~ 48795320 (-)
LOC110534171 LOC106602941 coding upstream 353444 48854852 ~ 48877877 (-)
G897091 NA non-coding downstream 85640 48410972 ~ 48413196 (-)
G897071 NA non-coding downstream 108141 48390471 ~ 48390695 (-)
G897044 NA non-coding downstream 175776 48322848 ~ 48323060 (-)
G897011 NA non-coding downstream 262422 48236099 ~ 48236414 (-)
G897008 NA non-coding downstream 274119 48224293 ~ 48224717 (-)
G897432 NA non-coding upstream 23859 48525267 ~ 48554785 (-)
G897448 NA non-coding upstream 47473 48548881 ~ 48648457 (-)
G897579 LOC106602942 non-coding upstream 317122 48818530 ~ 48828814 (-)
G897603 NA non-coding upstream 341949 48843357 ~ 48843664 (-)
G896841 NA other downstream 509760 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1265790 47203241 ~ 47234608 (-)
G894917 NA other downstream 2580497 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2748505 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 3482789 45011329 ~ 45017446 (-)
LOC110534172 LOC106602940 other upstream 380319 48881449 ~ 48907973 (-)
G899409 NA other upstream 1654784 50156192 ~ 50156902 (-)
G899421 NA other upstream 1680988 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 1964059 50463950 ~ 50482534 (-)
G899727 NA other upstream 2219578 50720986 ~ 50721603 (-)

Expression


Co-expression Network