G897448


Basic Information

Item Value
gene id G897448
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48548881 ~ 48648457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1021020
ATAAGAGACCACATATAATAATAGAGAAGCGGCACTGCGGGTTTTCTCCCTTACATTACCCAATGTAGACCTGGCAAGGTAGAAGACGCAAACAGGCTGTTTACCCAGAATACTCAAGATTAATTGAAAACTAGAATACACTACTAGGAACCTTGAGGCAAAGTTGTGCACCCTGAATCTGACATTATTGTAACAGCAAAAGCCAACTACAATGACTGTCATACTGCCATATACactgactataccaaacattaggaacaccttcctaatattggcacctactaacataccccgttcaaaggcacttagatattttgtattgcccattcaccctttgaatggcacacaaacaattcatgtctcaaggcttaaaaatcattatttaaccagtccccttcatctacactgatttaaagtggatttaacaagtgacatcaataaaagGGATCATAGactatccaggtgaaagctatgttgtggaaagagcaggtgttcctaatgtttttatACACTCAGTGCAAAGGGCCACTAGAGGAACAAGGTTGTAAACCTTAATACAATTGAGTGGACATAGATCAGGGTCTTAATTCAGGAAAATACCCTATGAAATCAAAACCAAACCATCCAAATACAAAAATGGGTGTTAGGGaataatactatatatacacacacgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1021020 True 675 lncRNA 0.38 2 48548881 48648457

Neighbor

gene id symbol gene type direction distance location
LOC110534163 atg4a coding downstream 3943 48536413 ~ 48544938 (-)
LOC110534161 LOC106602951 coding downstream 40237 48501662 ~ 48508644 (-)
LOC110533134 NA coding downstream 116137 48415517 ~ 48432744 (-)
LOC110534153 LOC106602956 coding downstream 161821 48355041 ~ 48387060 (-)
LOC118936700 LOC106602960 coding downstream 215704 48330443 ~ 48333177 (-)
dacha dach2 coding upstream 18249 48666706 ~ 48795320 (-)
LOC110534171 LOC106602941 coding upstream 206395 48854852 ~ 48877877 (-)
LOC110534172 LOC106602940 coding upstream 232992 48881449 ~ 48907973 (-)
LOC110534181 LOC106602931 coding upstream 493293 49141750 ~ 49242962 (-)
LOC110534182 LOC106602929 coding upstream 594699 49243156 ~ 49275989 (-)
G897425 LOC106602952 non-coding downstream 47473 48498836 ~ 48501408 (-)
G897091 NA non-coding downstream 135685 48410972 ~ 48413196 (-)
G897071 NA non-coding downstream 158186 48390471 ~ 48390695 (-)
G897044 NA non-coding downstream 225821 48322848 ~ 48323060 (-)
G897579 LOC106602942 non-coding upstream 170073 48818530 ~ 48828814 (-)
G897603 NA non-coding upstream 194900 48843357 ~ 48843664 (-)
G897640 rtn3 non-coding upstream 262911 48911368 ~ 48917423 (-)
G897679 LOC106602938 non-coding upstream 331024 48979481 ~ 48980569 (-)
G896841 NA other downstream 559805 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1315835 47203241 ~ 47234608 (-)
G894917 NA other downstream 2630542 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2798550 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 3532834 45011329 ~ 45017446 (-)
G899409 NA other upstream 1507735 50156192 ~ 50156902 (-)
G899421 NA other upstream 1533939 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 1817010 50463950 ~ 50482534 (-)
G899727 NA other upstream 2072529 50720986 ~ 50721603 (-)

Expression


Co-expression Network