G897237


Basic Information

Item Value
gene id G897237
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48666776 ~ 48668107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1020795
CCAGAAGtatgttttattgtttttgtgttaTGTGCAAGGCTGTGATGTGATACTATTATCATTAAAACAAGGTCAACAATTTTAGATAGCTGCCTGGTTGTGATCATGGTAATAATGAAATTCCCCAAAattctttaaaaatatatttaaattggcAGCTTTTTTAAACCAGCAAGTGTAACTTTTTACCAGTGTCGTATCTACATGCATGCTTGCATCGGATGTGCATTGGGGTATTTCATTTTactttcgttttttttttctcactaaAAATGTATCCACTTTATTACGACGTCAGAATAGCAAACgctaaagcatttttttttttacatgtctaaaaacgaAGGGGGAAAAGCGTAGAAATTCAGAAACCGTTTGAGTCCCTTTTACTTGATGATGAACGGGATAGAAGAAGAGAAGCACATCTTTGTCTTGAATTTGACATTTCATATCCTCCTTCAGACTTTTGAGCTTTAGGAAGATATGATCCTATATATGCGCTGCAAGACTTGTGCTATTGGGGCATTGGAGGAATCAACAACTAATAACGAGaataataatagcaataataattcataacaataataataataataaccagaGGAAAATCGGCTTGGAGAGAAATAGGATAGAGAAGGAGGATAGGCTTCTGTATGTGCTTCACAGGGAGTAGAGAGAAATCCAAGACAGTTTTATTTTCAATGGTCCTTACTTTTTTCTCTCAAAGAGGGTAGAACAAAAGTAGTCAAAACAAGTCAAATagagagatttttttttacaagtagCTGAAGTGAGATGATGGGGCAGCAATAAGTGGCACTCCAGTGTTGCCTCTCGCCCCACCACACCCTCTCTGCAGTCCTGTACATGAGTTTCAGGGgatccattcctccctccagtCATCCCTCTTCTCCACTCGTCCTCTCCCAGCCAAGGGCTCTGTCTCTGGGGAAGCCTGCAGCGACAGCCCTGGGCCAGGTCTAGAGAAGCTGGAGGTCTCTCTCAGTACATTATGGGAGGCTTGGTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1020795 True 1029 lncRNA 0.39 2 48666776 48668107

Neighbor

gene id symbol gene type direction distance location
LOC110534166 LOC106602946 coding upstream 42375 48587286 ~ 48624401 (+)
LOC118936701 NA coding upstream 98363 48567576 ~ 48568413 (+)
LOC110534165 LOC106602949 coding upstream 115598 48550084 ~ 48551178 (+)
LOC110534164 t185l coding upstream 116833 48545218 ~ 48549943 (+)
LOC110533135 NA coding upstream 133930 48529819 ~ 48532846 (+)
chm LOC106602942 coding downstream 136918 48805025 ~ 48840284 (+)
LOC118936702 NA coding downstream 168965 48837072 ~ 48838821 (+)
LOC110534170 frmd7 coding downstream 172497 48840604 ~ 48855932 (+)
rtn3 rtn3 coding downstream 243279 48911386 ~ 48927265 (+)
LOC110534173 LOC106602939 coding downstream 277556 48945663 ~ 48955133 (+)
G897207 NA non-coding upstream 44803 48596351 ~ 48621973 (+)
G897165 atg4a non-coding upstream 127623 48538542 ~ 48539153 (+)
G897121 NA non-coding upstream 142010 48524526 ~ 48524766 (+)
LOC110534159 LOC106602952 non-coding upstream 163033 48490263 ~ 48503743 (+)
G896226 LOC106602963 non-coding upstream 418688 48247229 ~ 48248088 (+)
G897336 NA non-coding downstream 212440 48880547 ~ 48880763 (+)
G897337 NA non-coding downstream 212757 48880864 ~ 48881140 (+)
G897362 NA non-coding downstream 269531 48937638 ~ 48964172 (+)
G897689 NA non-coding downstream 332045 49000152 ~ 49000627 (+)
G896217 NA other upstream 431160 48235182 ~ 48235616 (+)
G896043 NA other upstream 755801 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1449705 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1461934 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1515227 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 8150 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 609595 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 762292 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1366883 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3782111 52450218 ~ 52475365 (+)

Expression


Co-expression Network