Gene
RNA
| Item | Value |
|---|---|
| gene id | G897640 |
| gene name | rtn3 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 48911368 ~ 48917423 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rtn3 | Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in gill; heart; musculature system; and nervous system. Orthologous to human RTN3 (reticulon 3). |
| description |
|---|
| Reticulon-3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1021234 | True | 455 | lncRNA | 0.47 | 2 | 48911368 | 48917423 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534172 | LOC106602940 | coding | downstream | 3395 | 48881449 ~ 48907973 (-) |
| LOC110534171 | LOC106602941 | coding | downstream | 33491 | 48854852 ~ 48877877 (-) |
| dacha | dach2 | coding | downstream | 116048 | 48666706 ~ 48795320 (-) |
| alg13 | LOC106602945 | coding | downstream | 276766 | 48626002 ~ 48634602 (-) |
| LOC110534163 | atg4a | coding | downstream | 366430 | 48536413 ~ 48544938 (-) |
| LOC110534181 | LOC106602931 | coding | upstream | 224327 | 49141750 ~ 49242962 (-) |
| LOC110534182 | LOC106602929 | coding | upstream | 325733 | 49243156 ~ 49275989 (-) |
| LOC110534186 | LOC100194652 | coding | upstream | 384994 | 49302417 ~ 49309197 (-) |
| LOC110534187 | NA | coding | upstream | 395987 | 49313410 ~ 49318075 (-) |
| LOC110534188 | LOC106602927 | coding | upstream | 401175 | 49318598 ~ 49425142 (-) |
| G897603 | NA | non-coding | downstream | 67704 | 48843357 ~ 48843664 (-) |
| G897579 | LOC106602942 | non-coding | downstream | 82554 | 48818530 ~ 48828814 (-) |
| G897448 | NA | non-coding | downstream | 262911 | 48548881 ~ 48648457 (-) |
| G897432 | NA | non-coding | downstream | 356583 | 48525267 ~ 48554785 (-) |
| G897679 | LOC106602938 | non-coding | upstream | 62058 | 48979481 ~ 48980569 (-) |
| G897962 | NA | non-coding | upstream | 82469 | 48999892 ~ 49000466 (-) |
| G897965 | NA | non-coding | upstream | 87971 | 49005394 ~ 49005620 (-) |
| G897971 | NA | non-coding | upstream | 102055 | 49019478 ~ 49020439 (-) |
| G898012 | LOC106602935 | non-coding | upstream | 183215 | 49100638 ~ 49103818 (-) |
| G896841 | NA | other | downstream | 922292 | 47987761 ~ 47989076 (-) |
| LOC110534118 | LOC106603020 | other | downstream | 1678322 | 47203241 ~ 47234608 (-) |
| G894917 | NA | other | downstream | 2993029 | 45917279 ~ 45918339 (-) |
| LOC110534046 | LOC107567170 | other | downstream | 3161037 | 45747090 ~ 45751405 (-) |
| G899409 | NA | other | upstream | 1238769 | 50156192 ~ 50156902 (-) |
| G899421 | NA | other | upstream | 1264973 | 50182396 ~ 50182788 (-) |
| LOC110534220 | LOC106602898 | other | upstream | 1548044 | 50463950 ~ 50482534 (-) |
| G899727 | NA | other | upstream | 1803563 | 50720986 ~ 50721603 (-) |
| G899739 | LOC106602890 | other | upstream | 1825735 | 50743158 ~ 50750233 (-) |
