G897679 (LOC106602938)


Basic Information

Item Value
gene id G897679
gene name LOC106602938
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48979481 ~ 48980569 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1021278
ATTCACATGAACACACAAACAATGAACACATCAACGCAGCAGATGGTCACAAGTTAGTACTCAGATTTATTAAAACAGCAATAGAGATGTGATACATATGTAATTTACAAATCACTGTCTTCGGGGCAGCTGGATTGGTCATGCTTTTGATTTCACAACTGTCTCCAGCGCTTTAGCCACTTGGTCAGCATTCATATTGTCAAGGGCCACACTGCTCTCTTTTCCAAAAGCTGCATATCTTGCCCAAAGCTTAGGCTGAACACCTGAGCACTCCCTGATGAGGATGGGGAATGTGGGGTTTGCCTTCTTCAGTTCCACATAGTGCTGCTCCACAAAATCCCTTGCTCCTTGACTCGCAGGCGATGTCTGGCACAAATGTAGACGAATCTCTCGAAGGTTTTTAGCAAGGTTAGAGCCAATGCCTCGTACTACGGCAGCGGCCATGATGTTTTTTTCTGCTTTGGGTAAATATTCCTGAACACGCCCATCTCTCAACAACAAATCATTTAAAAGAAGTGTTGTAATTTGAACCAATCACTTTCCACGTTCAAG
>TU1021281
ATTCACATGAACACACAAACAATGAACACATCAACGCAGCAGATGGTCACAAGTTAGTACTCAGATTTATTAAAACAGCAATAGAGATGTGATACATATGTAATTTACAAATCACTGTCTTCGGGGCAGCTGGATTGGTCATGCTTTTGATTTCACAACTGTCTCCAGCGCTTTAGCCACTTGGTCAGCATTCATATTGTCAAGGGCCACACTGCTCTCTTTTCCAAAACATATCTTGCCCAAAGCTTAGGCTGAACACCTGAGCACTCCCTGATGAGGATGGGGAATGTGGGGTTTGCCTTCTTCAGTTCCACATAGTGCTGCTCCACAAAATCCCTTGCTCCTTGACTCGCAGGCGATGTCTGGCACAAATGTAGACGAATCTCTCGAAGGTTTTTAGCAAGGTTAGAGCCAATGCCTCGTACTACGGCAGCGGCCATGATGTTTTTTTCTGCTTTGGGTAAATATTCCTGAACACGCCCATCTCTCAACAACAAATCATTTAAAAGAAGTGTTGTAATTTGAACCAATCACTTTCCACGTTCAAG
>TU1021279
ATTCACATGAACACACAAACAATGAACACATCAACGCAGCAGATGGTCACAAGTTAGTACTCAGATTTATTAAAACAGCAATAGAGATGTGATACATATGTAATTTACAAATCACTGTCTTCGGGGCAGCTGGATTGGTCATGCTTTTGATTTCACAACTGTCTCCAGCGCTTTAGCCACTTGGTCAGCATTCATATTGTCAAGGGCCACACTGCTCTCTTTTCCAAAACATATCTTGCCCAAAGCTTAGGCTGAACACCTGAGCACTCCCTGATGAGGATGGGGAATGTGGGGTTTGCCTTCTTCAGTTCCACATAGTGCTGCTCCACAAAATCCCTGAAGAACATGGAGAACAGTGAAATAGTTATTTCACCATTTCATAATACTAGTTACTATTCCATAGTAGTGAAATAACCATCTATTAAACAAGGGAGACAATTGTCTCACTGGTAACGGGAAAG

Function

NR:

description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1021278 False 552 lncRNA 0.44 3 48979481 48980569
TU1021281 False 548 lncRNA 0.43 3 48979481 48980569
TU1021279 True 461 lncRNA 0.41 2 48979993 48980569

Neighbor

gene id symbol gene type direction distance location
LOC110534172 LOC106602940 coding downstream 71508 48881449 ~ 48907973 (-)
LOC110534171 LOC106602941 coding downstream 101604 48854852 ~ 48877877 (-)
dacha dach2 coding downstream 184161 48666706 ~ 48795320 (-)
alg13 LOC106602945 coding downstream 344879 48626002 ~ 48634602 (-)
LOC110534163 atg4a coding downstream 434543 48536413 ~ 48544938 (-)
LOC110534181 LOC106602931 coding upstream 161181 49141750 ~ 49242962 (-)
LOC110534182 LOC106602929 coding upstream 262587 49243156 ~ 49275989 (-)
LOC110534186 LOC100194652 coding upstream 321848 49302417 ~ 49309197 (-)
LOC110534187 NA coding upstream 332841 49313410 ~ 49318075 (-)
LOC110534188 LOC106602927 coding upstream 338029 49318598 ~ 49425142 (-)
G897640 rtn3 non-coding downstream 62058 48911368 ~ 48917423 (-)
G897603 NA non-coding downstream 135817 48843357 ~ 48843664 (-)
G897579 LOC106602942 non-coding downstream 150667 48818530 ~ 48828814 (-)
G897448 NA non-coding downstream 331024 48548881 ~ 48648457 (-)
G897962 NA non-coding upstream 19323 48999892 ~ 49000466 (-)
G897965 NA non-coding upstream 24825 49005394 ~ 49005620 (-)
G897971 NA non-coding upstream 38909 49019478 ~ 49020439 (-)
G898012 LOC106602935 non-coding upstream 120069 49100638 ~ 49103818 (-)
G898032 NA non-coding upstream 140916 49121485 ~ 49121874 (-)
G896841 NA other downstream 990405 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1746435 47203241 ~ 47234608 (-)
G894917 NA other downstream 3061142 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 3229150 45747090 ~ 45751405 (-)
G899409 NA other upstream 1175623 50156192 ~ 50156902 (-)
G899421 NA other upstream 1201827 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 1484898 50463950 ~ 50482534 (-)
G899727 NA other upstream 1740417 50720986 ~ 50721603 (-)
G899739 LOC106602890 other upstream 1762589 50743158 ~ 50750233 (-)

Expression


Co-expression Network