G898012 (LOC106602935)


Basic Information

Item Value
gene id G898012
gene name LOC106602935
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49100638 ~ 49103818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1021659
CCTTTGACATTATAATATCCTTTTATTTACAGCCCCACATTCACAAGATATTATATAACGACGGCAAATTACTACTTTAGACCctttagaaaatgtatttttctaaacacacacacacgtcaacttCGGTACGTTACAAACGTGCATGCCTCAAAAGAAAGTGTAACTTACCCAGAATAATAAAAAAAGCCGTGCTCTTATACAGTACGGTGCGAGGAGCGGAACAACCGCAACATCAGAGTTCAGTCTGATTGAAGTTCTAATGCCGTATTAAAGTGGCAGTAGGCCTGGCCATTATCACAATAAGACTAAACTACTGTATAAAACAAGTATACATTCTGTAGAATCAGTTCTAGAAAAGACACAGAGAATTTGGCAGTTGGGGTTCTTGGTGTATCCTTCTCTATCAAATATGTTGAGGAAAACATTTGCCATATTCAGCGGATTTGTTCACAAATTGCTTTGCAGTACAAAGTGGGATATTCATCTATAGTGAACTGCCAATGGTATACAactttggaagaaaaaaaaagctAAATCCCATTCGGGCAGTTTTTCACAGCACAATCAAACATTCTGTGAGGAATTCATTGTTAGCAGATAGGGAAACATATACTGTAGCTTATAGAGGTGATATCATTTTCAAATTTGTCCAGTATTTACATTCTTCTGACAGTAAAAAGATAAAACACCGGTAAAATCTCAGAGTACatctgaaatgtcacatttaacACATTTTGAGGACTACAAGCCCAAGCAGAGAGAACCAACGCTCATTTTACACTTGCATGCAATATAATGTGATGCTAACACTGGAGAGGAAAGAAACAGAAGGAATGGAACACATTGATAAAACAAAGTCACTTAATTAAAATCATTGCCATTTTAAAATCCACACCAAATCTTAAATCAGAACACTCTATTcagttcttttttttttctttttttttacaatctGACTTATTGCAGAAAATCCTGGGGTAGTGTTAGTAGTCTTTTGCAAATGGCTTCTTACTTTGAACTGTAGTAGGCAGAATACTGTACTTTACACTATCTGTTGCAAGTAAGTTAAACTGCTCTAACAAGCAAGAGGGTTTGTATTGATAACACTAATAGGTAGGGAAGATCTGTACACCCACAGTCCTCATTGGAAAAACCTAAAGAGGTGTTTTAATATTACTTTCACCTACAGTACCCTACCCATGTTAAATATAGCTGTTTCTGTAGATATAAAGATGTATTTGTGTATAGTATTGAAGCCCAGAAATGGCAGTTTGTTGCCCTAGTCATATAATCACATGAGGTGAGTGGCTGTTCAGACCAGCGGTCCACCATTCAGTCATTTAAACCTGTGAGGGGAAAGTACGGTTTCCTCTGTTGTCTACGCTAAATGTGCTCGAGGCACCATGATCACGGGGTGGTGGATTATCAACTGTGGAATACACCAGAAGACCCATAATCAAAAGGAACATTTCACTGTCCGTGAATGCTTGCCCACTTCTCATAATCCAATCCATGTCAAATTAATCaaacatgtacagtagatatttTGGTTCAGTGACACATGGTACATCGTCAATGTTTCTATCATGGCCTGCAAGTCCGGGTTCAGAGGATGGCGTGGCGGTGTGTAACGGTATGGTGTAAGTGCAACTGCATTGAAAAGGCCAAGTCACGTGTAAAAAAGAGATCTAGGCGGCGATTACGGCAAGTGCTTTAGAGATTCAACCCCCCTCGTACATCCATTTGTACTAATTGTGCCTCTGCCAATGAAACATGACAAGAAAAAATAAAGTCAGAGCAGAGACCGAATATAGTCCTGAAAGCATATATACATACATGAGAGCCTGACACGGTGTGACATTTATGCGATTGGCTTGTGACAGACAGCGTTGAGAGGAGTAATCTGATTTCAAGTAAAGAGATGAGATGCAGTGGGCTCGTGCTTCCTCAGGGCCGGTCGGTGGGCATCCCTCTGTGTCCCCATGCAGCCAGCTGGTCACCCACCTGTGTCACTCAGAGAGATGTCTCACTCAAACCCTCCCGCCCTCTGGAGCTCAGCTGGGcgTTGGTGATGGCGGAGGGTGATCCAGAGCGGTGGAAGTGGACTATCTGCCACTTGCCGTCGCGGCGGTGCCAGATGCGTGTCTCCTCCGACTGGGCGGTGCGGGGCATGCCGTTGGTGTCGATGTATTGGGTGATGCGGATGTAGGCGATGCAGGCAGCTTCCTCGCCGATCAGGTGGATGTGGGGGTTCAGGATGGTGGTGTGGACAGGCTTACTGTTCTTAGACCACACTGGGGTGAGGAGTAGCAAACAAATAAGACAATAGTCAGTCAATGAATAAGTCATTCTACAGGAATTTTCACTGTGGTTTATGACTAGGTATGCCATGTTCTCTCTCACTGATGATGTCACTTTTCCCTCATCAATGCTTTATGTAGTTCATATTTGAGTGGGTTCATTAATGTTATCATATCAGCATGTCTCTCTCAGCCTGCCACACTCTCATtatgtttctctccctttctctccatttctctcttcctctttctcgcTCTGCCATTTTCCCAAATAGCCCAATCAAGCCCATTAGAGCCGTTTCCACTGCCTGGGAGAACAGTGGCTGATATGAGAGGATTAGAGCAGAGCAGGGTTGGTCCATTACTCACCACAAATGAGAAATCAGAGAGCAAATGAGCCAAAAGCGTGCTGTCTGCAGCCACGGCTGGACACAGCCCCTGCATCAGCTAATGAGCGCGATATTCACTTACAGAAACTGGCCCCAAGCTTCTGTTCTCCATAACTTCCTGTAATCCTGTAATTGTCGCCTTGGTAGTTTACTCCTGCAttgtttttataaaaaatatatatttcttggTCCTGCTTTAAATTACGTGCCGCTTATATAGTCTTCATAAACACTACGTCAACGTGTCAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1021659 True 2942 lncRNA 0.42 2 49100638 49103818

Neighbor

gene id symbol gene type direction distance location
LOC110534172 LOC106602940 coding downstream 192665 48881449 ~ 48907973 (-)
LOC110534171 LOC106602941 coding downstream 222761 48854852 ~ 48877877 (-)
dacha dach2 coding downstream 305318 48666706 ~ 48795320 (-)
alg13 LOC106602945 coding downstream 466036 48626002 ~ 48634602 (-)
LOC110534163 atg4a coding downstream 555700 48536413 ~ 48544938 (-)
LOC110534181 LOC106602931 coding upstream 37932 49141750 ~ 49242962 (-)
LOC110534182 LOC106602929 coding upstream 139338 49243156 ~ 49275989 (-)
LOC110534186 LOC100194652 coding upstream 198599 49302417 ~ 49309197 (-)
LOC110534187 NA coding upstream 209592 49313410 ~ 49318075 (-)
LOC110534188 LOC106602927 coding upstream 214780 49318598 ~ 49425142 (-)
G897971 NA non-coding downstream 80199 49019478 ~ 49020439 (-)
G897965 NA non-coding downstream 95018 49005394 ~ 49005620 (-)
G897962 NA non-coding downstream 100172 48999892 ~ 49000466 (-)
G897679 LOC106602938 non-coding downstream 120069 48979481 ~ 48980569 (-)
G897640 rtn3 non-coding downstream 183215 48911368 ~ 48917423 (-)
G898032 NA non-coding upstream 17667 49121485 ~ 49121874 (-)
G898051 NA non-coding upstream 45590 49149408 ~ 49149627 (-)
G898061 NA non-coding upstream 55323 49159141 ~ 49159362 (-)
G898077 LOC100380851 non-coding upstream 69501 49173319 ~ 49174917 (-)
G898045 NA non-coding upstream 80617 49184435 ~ 49184838 (-)
G896841 NA other downstream 1111562 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1867592 47203241 ~ 47234608 (-)
G894917 NA other downstream 3182299 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 3350307 45747090 ~ 45751405 (-)
G899409 NA other upstream 1052374 50156192 ~ 50156902 (-)
G899421 NA other upstream 1078578 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 1361649 50463950 ~ 50482534 (-)
G899727 NA other upstream 1617168 50720986 ~ 50721603 (-)
G899739 LOC106602890 other upstream 1639340 50743158 ~ 50750233 (-)

Expression


Co-expression Network