G897864


Basic Information

Item Value
gene id G897864
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49300893 ~ 49301198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1021492
GTAGAGTGGACCCACTGCAACCTAATCCTTGGAATCTTCACAGGAGAGTTATGATagcagagtggccagatggaagccactcctcagtaaaaggcacatgacagcctgcttggagtttgccaaaaggcacttaaaggactctcagaccatgagaaaccagattcacTGTTCTTATTAAGATTGAACTCttcagcctgaatgccaagcatcacgtctggaggaaacctggcactatccctatgatgaagcatgctggttgcagcatcatgctgtgaggatgtttttcagtggcagggactgggagac

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1021492 True 306 lncRNA 0.48 1 49300893 49301198

Neighbor

gene id symbol gene type direction distance location
LOC110534184 LOC106563731 coding upstream 18147 49277626 ~ 49282746 (+)
LOC110534180 LOC106602932 coding upstream 74312 49218199 ~ 49226581 (+)
LOC110534179 LOC106602933 coding upstream 88763 49189943 ~ 49212130 (+)
LOC110534178 LOC100380851 coding upstream 119133 49160630 ~ 49181760 (+)
LOC110534177 LOC106602935 coding upstream 197073 49029563 ~ 49103820 (+)
LOC110534189 LOC106602925 coding downstream 125587 49426785 ~ 49432958 (+)
rgs14b LOC106602924 coding downstream 149670 49450868 ~ 49472529 (+)
cnot6a LOC106602922 coding downstream 304035 49605233 ~ 49618387 (+)
LOC110533139 LOC106602921 coding downstream 359682 49660880 ~ 49720570 (+)
LOC110534194 LOC106602920 coding downstream 424653 49725851 ~ 49730277 (+)
G897858 NA non-coding upstream 6939 49293748 ~ 49293954 (+)
G897857 NA non-coding upstream 7218 49293476 ~ 49293675 (+)
G897854 NA non-coding upstream 9237 49291399 ~ 49291656 (+)
G897851 NA non-coding upstream 13568 49287037 ~ 49287325 (+)
G897848 NA non-coding upstream 15478 49285214 ~ 49285415 (+)
G897859 NA non-coding downstream 1153 49302351 ~ 49309909 (+)
G897901 NA non-coding downstream 63807 49365005 ~ 49365204 (+)
G897903 NA non-coding downstream 64725 49365923 ~ 49366603 (+)
G897907 NA non-coding downstream 74066 49375264 ~ 49375554 (+)
G897918 NA non-coding downstream 88555 49389753 ~ 49390175 (+)
G897244 dach2 other upstream 623828 48676257 ~ 48677065 (+)
G896217 NA other upstream 1065277 48235182 ~ 48235616 (+)
G896043 NA other upstream 1389918 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 2083822 47216407 ~ 47217071 (+)
G898894 LOC106603005 other downstream 733792 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3149020 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3231530 52532434 ~ 52542498 (+)
G902707 NA other downstream 4214909 53516107 ~ 53519788 (+)

Expression


Co-expression Network