G897859



Basic Information


Item Value
gene id G897859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49302351 ~ 49309909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1021481
TTCCTAGACAGACTTggtgaaaaaaaagaaaagagaaaccACTGAAGAACCAGACAAAAGCAGAGGTCGGAATTAACCTTTTATTGAGTGAAAAAACTCAAAATAAGCACATTTACAGACGACGCCCACGACGACCTCCCTTTCTGCGGGTGCTGTCTGATGGAATAGGGGTGACATCCTCGATGCGTCCAATCTTCATGCCAGAACGAGCCAAGGCACGGAGAGCAGACTGTGCGCCTGGTCCAGGGGTCTTGGTTCTGTTCCCGCCAGTGGCCCTCAACTTGATGTGGAGGGCAGTGATTCCCAGCTCCTTGCACCTCTGGGCGACGTCCTGGGCGGCCAACATGGCGGCGTAGGGGGAGGACTCGTCTCTGTCGGCCTTCACCTTCATACCACCAGTCACACGGCAGATAGTTTCCCTGCAGAAAGATCAGTGACGTGAACGAAGGTGTCGTTGAAGGATGCAAAGATGTGGCAGACTCCAAAGACATTCTCGCCTTCGGCAACCTGGGGTCCCAGGGCGATGACCTGTTCTTCCTTCTTTTCCTTACCCTTACGAGGTGCCATAGCTGCAAAATATGCATTTGCCAGTATTGATGACGTCAGACATGTCTGGCATTAAGCATCCATTCAAGTGCCCCAATTTGGGACCAGGTGGAGTGGGCACCATTGCTAAATAGTTAGCAGGCTAGGTCTTGGTTAAGGATGGGTTCCTTTGTAGATAACTTCACCACAATATACTTTTGTAACTAGCTAGTTCACTAAGTAACTGTAGGAGAGTATATGGACAACCATTAACTAGCCATTATCGCAACTGACCAATAACCAACTGTCTGGCTTAAAAGGCAACGCTCGACACAAAAATCACATAGCACGACAGGCAAGAAGCTAGACTTGCTAGCTATATCATAGCATATACAACACGACAATTTCCATACCAAAATAACCCATGTGCGATAGTCAGTCACAGCAAAGTCGAGAGTAAAAACTACAGATGCCCATCGTTAGCCGACTACTTTAAGGTTAGCACTGAATTACCACGACAGCAACCTAACTAGCATCACTCAGCAAGTCTGTTCGATTTAATTTTAAAACGTATTCGACTTCAAATCTGCAAAAATGCACATGACTGAAGACAACATGGTTAACATGGCAAGTCATAAAATCCACTCAATATGCTCCATCCGGCAAACGAAATTCAGGCCTTACAGTGATGGAAACCGCTGCTTACAGCCAACACCAATGCCATCTAATCCAAACGTCTGAAGCCGATTTCAGACAAATTACACATTTAACATACCAATCAAAGTTCAGTGTATCGATTAAAAGCACAAATGACACATTGTACTTTATGTTAAACAGGATTCATTTGGATATAAATTCTGCGACattgtacctgtgtgtgtctcttctaaAGCCGAAACAGGAAAGGAA
>TU1021484
TTCCTAGACAGACTTggtgaaaaaaaagaaaagagaaaccACTGAAGAACCAGACAAAAGCAGAGGTCGGAATTAACCTTTTATTGAGTGAAAAAACTCAAAATAAGCACATTTACAGACGACGCCCACGACGACCTCCCTTTCTGCGGGTGCTGTCTGATGGAATAGGGGTGACATCCTCGATGCGTCCAATCTTCATGCCAGAACGAGCCAAGGCACGGAGAGCAGACTGTGCGCCTGGTCCAGGGGTCTTGGTTCTGTTCCCGCCAGTGGCCCTCAACTTGATGTGGAGGGCAGTGATTCCCAGCTCCTTGCACCTCTGGGCGACGTCCTGGGCGGCCAACATGGCGGCGTAGGGGGAGGACTCGTCTCTGTCGGCCTTCACCTTCATACCACCAGTCACACGGCAGATAGTTTCCTGCCAGAAAGATCAGTGACGTGAACGAAGGTGTCGTTGAAGGATGCAAAGATGTGGCAGACTCCAAAGACATTCTCGCCTTCGGCAACCTGGGGTCCCAGGGCGATGACCTGTTCTTCCTTCTTTTCCTTACCCTTACGAGGTGCCATAGCTGCAAAATATGCATTTGCCAGTATTGATGACGTCAGACATGTCTGGCATTAAGCATCCATTCAAGTGCCCCAATTTGGGACCAGGTGGAGTGGGCACCATTGCTAAATAGTTAGCAGGCTAGGTCTTGGTTAAGGATGG
>TU1021485
aaataacagCACCATCTCGTTTATTACAGATACTCCTGACAGAGTAAATGAGCTAAAGCTTACCGATGCGTCCAATCTTCATGCCAGAACGAGCCAAGGCACGGAGAGCAGACTGTGCGCCTGGTCCAGGGGTCTTGGTTCTGTCCCGCCAGTGGCCCTCAACTTGATGTGGAGGGCAGTGATTCCCAGCTCCTTGCACCTCTGGGCGACGTCCTGGGCGGCCAACATGGCGGCGTAGGGGGAGGACTCGTCTCTGTCGGCCTTCACCTTCATACCACCAGTCACACGGCAGATAGTTTCCCTTGCCAGAAAGATCAGTGACGTGAACGAAGGTGTCGTTGAAGGATGCAAAGATGTGGCAGACTCCAAAGACATTCTCGCCTTCGGCAACCTGGGGTCCCAGGGCGATGACCTGTTCTTCCTTCTTTTCCTTACCCTTACGAGGTGCCATAGctgtgtgtgtctcttctaaAGCCGAAACAGGAAAGGAA
>TU1021479
ACCAGATTGTGCTTCAGATTAGTGAGGAGGGGGTTCCTAACCTGTTCCCGCCAGTGGCCCTCAACTTGATGTGGAGGGCAGTGATTCCCAGCTCCTTGCACCTCTGGGCGACGTCCTGGGCGGCCAACATGGCGGCGTAGGGGGAGGACTCGTCTCTGTCGGCCTTCACCTTCATACCACCAGTCACACGGCAGATAGTTTCCTTGCCAGAAAGATCAGTGACGTGAACGAAGGTGTCGTTGAAGGATGCAAAGATGTGGCAGACTCCAAAGACATTCTCGCCTTCGGCAACCTGGGGTCCCAGGGCGATGACCTGTTCTTCCTTCTTTTCCTTACCCTTACGAGGTGCCATAGCTGCAAAATctgtgtgtgtctcttctaaAGCCGAAACAGGAAAGGAAAGAACAAACGTAACCGGGTTCAGAGTTCAAGCTTTCTTTTTCCGGAAGTAGACCATGCACTTCACTGCCATCAAGCGGTTCATTTGTAGCCTAAACAGCACGCACAATCTATCTCTCCCGTTGTCTGTACGGTGTATAAGTCAGAAATATAAATCAGATAAATGAAAACGGCCCATTATTGTATATTTcaacatatacagtatgtgacataAATGTACTTATGTGTGTGGATACATATATCTGTATGTATGGGCATATGCTCGTATGTGTGTGACACATGCAGTATTCACATTTAtattacatacactacatggccaaaagcatgtggacacttgctcgtcaaacatctaattccaaaatcatgggcattaatatggagttggtcccgattttacaacagccttcactcttctgagaaggctttccacaaacaaaaatatatggaaatgtctgctctacccaaaattacaaccaactaattgcaggattaccgcaaaaatggaagaggcaagtggaagggggagaaagtaaggaacttgtctgtcggtcCTGCAtcaaagaccaaaattggttaaagaaaattgtgatatataaaaaagtataccagtttcatttaaggacccaaaaattgacagctgtgccacatagattgcaaaatagttgggaagagattttcgatgtactgattccatggcacatggtttatgaactgattcTCAAAACGACGCCGGATTAAAAACTTAGAATTTTTCATTTAAATTCGGGTTagagtttggccagggtaggttatcattgcaaataagaatgttcttaac
>TU1021483
ACCAGATTGTGCTTCAGATTAGTGAGGAGGGGGTTCCTAACCTGTTCCCGCCAGTGGCCCTCAACTTGATGTGGAGGGCAGTGATTCCCAGCTCCTTGCACCTCTGGGCGACGTCCTGGGCGGCCAACATGGCGGCGTAGGGGGAGGACTCGTCTCTGTCGGCCTTCACCTTCATACCACCAGTCACACGGCAGATCTTGCCAGAAAGATCAGTGACGTGAACGAAGGTGTCGTTGAAGGATGCAAAGATGTGGCAGACTCCAAAGACATTCTCGCCTTCGGCAACCTGGGGTCCCAGGGCGATGACCTGTTCTTCCTTCTTTTCCTTACCCTTACGAGGTGCCATAGCTGCAAAATATGCATTTGCCAGTATTGATGACGTCAGACATGTCTGGCATTAAGCATCCATTCAAGTGCCCCAATTTGGGACCAGGTGGAGTGGGCACCATTGCTAAATAGTTAGCAGGCTAGGTCTTGGTTAAGGATGG

Function


NR:

description
40S ribosomal protein S14-like

GO: NA

KEGG:

id description

RNA


RNA id representative length rna type GC content exon number start site end site
TU1021481 False 1434 lncRNA 0.45 4 49302351 49309094
TU1021484 False 709 lncRNA 0.52 4 49302351 49308369
TU1021485 False 491 lncRNA 0.54 4 49304866 49309094
TU1021479 False 1216 lncRNA 0.43 3 49307709 49309909
TU1021483 True 488 lncRNA 0.53 2 49307709 49308369

Neighbor


gene id symbol gene type direction distance location
LOC110534184 LOC106563731 coding upstream 19605 49277626 ~ 49282746 (+)
LOC110534180 LOC106602932 coding upstream 75770 49218199 ~ 49226581 (+)
LOC110534179 LOC106602933 coding upstream 90221 49189943 ~ 49212130 (+)
LOC110534178 LOC100380851 coding upstream 120591 49160630 ~ 49181760 (+)
LOC110534177 LOC106602935 coding upstream 198531 49029563 ~ 49103820 (+)
LOC110534189 LOC106602925 coding downstream 116876 49426785 ~ 49432958 (+)
rgs14b LOC106602924 coding downstream 140959 49450868 ~ 49472529 (+)
cnot6a LOC106602922 coding downstream 295324 49605233 ~ 49618387 (+)
LOC110533139 LOC106602921 coding downstream 350971 49660880 ~ 49720570 (+)
LOC110534194 LOC106602920 coding downstream 415942 49725851 ~ 49730277 (+)
G897864 NA non-coding upstream 1153 49300893 ~ 49301198 (+)
G897858 NA non-coding upstream 8397 49293748 ~ 49293954 (+)
G897857 NA non-coding upstream 8676 49293476 ~ 49293675 (+)
G897854 NA non-coding upstream 10695 49291399 ~ 49291656 (+)
G897851 NA non-coding upstream 15026 49287037 ~ 49287325 (+)
G897901 NA non-coding downstream 55096 49365005 ~ 49365204 (+)
G897903 NA non-coding downstream 56014 49365923 ~ 49366603 (+)
G897907 NA non-coding downstream 65355 49375264 ~ 49375554 (+)
G897918 NA non-coding downstream 79844 49389753 ~ 49390175 (+)
G897919 NA non-coding downstream 80607 49390516 ~ 49391482 (+)
G897244 dach2 other upstream 625286 48676257 ~ 48677065 (+)
G896217 NA other upstream 1066735 48235182 ~ 48235616 (+)
G896043 NA other upstream 1391376 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 2085280 47216407 ~ 47217071 (+)
G898894 LOC106603005 other downstream 725081 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3140309 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3222819 52532434 ~ 52542498 (+)
G902707 NA other downstream 4206198 53516107 ~ 53519788 (+)

Expression



Co-expression Network