G898231


Basic Information

Item Value
gene id G898231
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49475216 ~ 49475768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1021924
actttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctttgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcgtgatgctctctgcgcttttgacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagag
>TU1021925
actttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctttgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcgtgatgctctctgcgcttttgacggacctctgagactatcacagtgcaggtgcatttatacgga
>TU1021922
gggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcgtgatgctctctgcgcttttgacggacctctgagactatcacagtgcaggtgcatttatacgga
>TU1021923
gggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcgtgatgctctctgcgcttttgacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagag

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1021924 False 553 lncRNA 0.43 1 49475216 49475768
TU1021925 False 459 lncRNA 0.44 1 49475216 49475674
TU1021922 False 242 lncRNA 0.46 1 49475433 49475674
TU1021923 True 336 lncRNA 0.44 1 49475433 49475768

Neighbor

gene id symbol gene type direction distance location
rgs14b LOC106602924 coding upstream 2687 49450868 ~ 49472529 (+)
LOC110534189 LOC106602925 coding upstream 43356 49426785 ~ 49432958 (+)
LOC110534184 LOC106563731 coding upstream 192470 49277626 ~ 49282746 (+)
LOC110534180 LOC106602932 coding upstream 248635 49218199 ~ 49226581 (+)
LOC110534179 LOC106602933 coding upstream 263086 49189943 ~ 49212130 (+)
cnot6a LOC106602922 coding downstream 129465 49605233 ~ 49618387 (+)
LOC110533139 LOC106602921 coding downstream 185112 49660880 ~ 49720570 (+)
LOC110534194 LOC106602920 coding downstream 250083 49725851 ~ 49730277 (+)
LOC110534196 LOC106602919 coding downstream 269319 49745087 ~ 49753067 (+)
clk4b LOC106602917 coding downstream 324899 49800667 ~ 49810924 (+)
G898229 NA non-coding upstream 1311 49473685 ~ 49473905 (+)
G897944 NA non-coding upstream 54148 49420717 ~ 49421068 (+)
G897941 NA non-coding upstream 58105 49416857 ~ 49417111 (+)
G897940 NA non-coding upstream 58829 49416187 ~ 49416387 (+)
G897936 NA non-coding upstream 62769 49412172 ~ 49412447 (+)
G898247 NA non-coding downstream 9405 49485173 ~ 49485391 (+)
G898267 NA non-coding downstream 31964 49507732 ~ 49507998 (+)
G898316 NA non-coding downstream 61704 49537472 ~ 49537967 (+)
G898318 NA non-coding downstream 65015 49540783 ~ 49541059 (+)
G898319 NA non-coding downstream 65516 49541284 ~ 49541692 (+)
G897244 dach2 other upstream 798151 48676257 ~ 48677065 (+)
G896217 NA other upstream 1239600 48235182 ~ 48235616 (+)
G896043 NA other upstream 1564241 47909716 ~ 47910975 (+)
G898894 LOC106603005 other downstream 559222 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 2974450 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3056960 52532434 ~ 52542498 (+)
G902707 NA other downstream 4040339 53516107 ~ 53519788 (+)
G902840 LOC106602714 other downstream 4194352 53670120 ~ 53674811 (+)

Expression


Co-expression Network