XLOC_000028


Basic Information

Item Value
gene id XLOC_000028
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1015812 ~ 1033638 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003007
CGCAGTGAAAGTGTTTGAGACTCAGTCAGCGAAAGTGAGCTGAAGAGAGATGAGCTCTCACAGGAAACATGTAGACTTCAACTCAAGATTTCACATCTgagattataaatattattattaatatcatactGCTGGACTTCAGATGGTATCCGGGATGCTTTTCGCATGTGCAGTCGGACCTGCTGGTTTCAGGGGCTTTTCAGTCGCGTTCCTGCTGTTATTGGCGATGGCTGGCTGTGATTTTACTGCGGTAAATGTAAAAGCCAGAGCAGGTGAAGCGGCTGAGTTACCCTGCACGTGTCCTGCTGATCAGGATCCGTTGCTGGTCTGGCAGAAGGACGTGAATGGAACGCAGCTCGTGGTTAATTACGACAAATCAAACAACAACGAGGATATTGCAGCAGATTTCCAAAACCGAACGGAGCTGAAGCGCAGCGGAGACGCTTGTTTTCTAATGTTTTACAGCGTTCGTCAGTCAGATGAGGGATGGTACAAGTGTTACTACATGAAATCCCCTTTAAAGCATAATAACATCTATCTGGAGGTcacagATCCAAGTCCTATTAAAGGCCCTGGGGACGTCCAGAGCACCGCAGTGATGTCTTCAGCCTGTGTGCTTCTCATCATCTTGATCGCCGTTGCAATTTTTCTGGGAATTATCTGCAGAAAGAGGCATTGCATGAAGAGAACGTCAGTTGCAACATCGACGAGGAGCATTTAGCAGATGTCAATAACTGATGTCAAATAAATCTACATCTGTGAGAGTCTGTCTGTGTGACTGAAACAACAAACTCAACCGAATGCACATGATAAAACACGCCGGGCATTTTTGATGTGGGGTGACCTATTTATTTTGCTCATCCGTCATAATCAGTCACttaatttgaatgtttatatGTACATGAGACATTTATAGACACATATAGACTTGATATATGTTAAAGCAATACTAAGATGCGCACTGAACATGTTCACtaatgtttacatatttacagttttacaaatCGTCGCCCTGCTAATGCAGATATGTGctcattattttttataacagtgttttatattgttttatatgtctggaaatgtgtgttttttatcttttatataaaaaatatatttttattaggac
>TCONS_00002805
GTTTGAGACTCAGTCAGCGAAAGTGAGCTGAAGAGAGATGAGCTCTCACAGGAAACATGTAGACTTCAACTCAAGATTTCACATCTgagattataaatattattattaatatcatactGCTGGACTTCAGATGGTATCCGGGATGCTTTTCGCATGTGCAGTCGGACCTGCTGGTTTCAGGGGCTTTTCAGTCGCGTTCCTGCTGTTATTGGCGATGGCTGGCTGTGATTTTACTGCGGTAAATGTAAAAGCCAGAGCAGGTGAAGCGGCTGAGTTACCCTGCACGTGTCCTGCTGATCAGGATCCGTTGCTGGTCTGGCAGAAGGACGTGAATGGAACGCAGCTCGTGGTTAATTACGACAAATCAAACAACAACGAGGATATTGCAGCAGATTTCCAAAACCGAACGGAGCTGAAGCGCAGCGGAGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003007 False 1126 lncRNA 0.41 4 1015812 1033638
TCONS_00002805 True 430 lncRNA 0.47 2 1015824 1023334

Neighbor

gene id symbol gene type direction distance location
XLOC_000027 n6amt1 coding upstream 44861 961607 ~ 970951 (+)
XLOC_000026 NA coding upstream 104261 794976 ~ 911551 (+)
XLOC_000025 jam2a coding upstream 407565 594584 ~ 608247 (+)
XLOC_000023 mrpl39 coding upstream 424481 532766 ~ 591331 (+)
XLOC_000024 dre-mir-155 coding upstream 439291 576444 ~ 576521 (+)
XLOC_000029 CR450787.2 coding downstream 185053 1218691 ~ 1218805 (+)
XLOC_000030 NA coding downstream 281651 1315289 ~ 1342237 (+)
XLOC_000031 NA coding downstream 325093 1358731 ~ 1360831 (+)
XLOC_000032 NA coding downstream 538209 1571847 ~ 1578251 (+)
XLOC_000033 urp2 coding downstream 566341 1599979 ~ 1614500 (+)
XLOC_000018 NA non-coding upstream 657250 355481 ~ 358562 (+)
XLOC_000011 NA non-coding upstream 858530 156792 ~ 157282 (+)
XLOC_000034 NA non-coding downstream 583565 1617203 ~ 1619314 (+)

Expression


Co-expression Network