G898894 (LOC106603005)


Basic Information

Item Value
gene id G898894
gene name LOC106603005
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50034990 ~ 50037685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1022627
cttcgacactgactgcatttgggtcttacctgaaacgcgATACACTTGAAGTCAATATTACATGAATCACTCTTTATTttcagcaagctggagaggtcaGTCAGTTGGATGCAGAAATTACCAGTCTGAAGTGAGCTCTATACATAGTGACTTATATGCGGCCACATAAAAACCAACATAAACATGATTCATCGGATTGATTCCAGCATATGACTGGCGCCATCTCCTATCTTAATTCATAGAACATATTCTGGGCGTTCTGCCAGATGGTCCTAAGGAAAGGGTCATGACTCCCTCATATCTTTACCCAGCACTGGCAGGAACCATGGATTGCTTATGACACAAAGacaaaattaacattttcaaTGCTATCTCATCACTACATATAATGATCCTGGTTTACTGTCCCTCCTATTAGAATCATGGTTTTACACACTGCACAACTATACAAATGGAATAGTCTTCTTCCTTTACAAGTGACAGTACAGACACAGTATCATAATATTTCTGAGAAAAAAATCTGAACACAAAGCATGCATGATATTAAAAAAGCTATGTAATATATGATTgtttgtacaaaaaaaaaatcttattacaccaaacatatacacacattgACCTAAATACAGTGAAACTGTGAAGAGGAAGCTGTATCATGAACCTAGCACAATCTCTCATAGTCAAATACATTCAAAagacacgcgcacgcacacacgcacgcatgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaactgaatcTCTTGATCAAATCCATGTCAAATCCATGTAAAAACAGTTCCTAGTTCCTCCTCTGTGTCAGTGATACACAGTGCAACATTTTAGCTAAAAGTTTCAGTGTAACAAAATCCTACCTTGCCAATAGCATACTACGGATACAATAAGGCCCTCAGTACTGCACTACAAATATGAGCCCACATACTGTGCAAAACTATAGATTTTTTTCTCAAGTACTTGAAAACCAAGACCCTTCAAGTTTAAATTTACAGTACGGTGCTGGAGTCTTTCTAGGAGATTCCTCTCCTAGTTTTTGTGTCAGACAGCAAACAAACACGCTAATGTTCAGGATAGCGATACCTCTCCTCTTCTTTTCCTTCATTTTTTCTGCCCTCCATTCAATCAGGCAGGTGAAGAAATCTCTCTCAGACGTAGTCCTTCCTGACGTATCCCGCTGCGCCCCCGCTGTGAGGGGCGGAGTAGGCCATGCCGGGGGGCTTgtacctcttctcctccctggGGGAGCAGGAGCTGCACAGCATAGCCCCTCCGATCAGTAGCAGGGCTGCAGCCCCCCAGCCAATGTAGAGAGAGGCCCCCAGCTCCCTCTTCTGTGCGTTGATCAGCAGGGGGTTGTAGAAGTCTTGGATGATGGTGCTGGCCGACCAGGAGACAGGGATGAGAACTAGGATCCCGGCCAGGATGAAGAAAATTCCGGAGATGATCATGACTTTAGCTTTGGAGGGTTCATCATCGATGCAGTTGGTGCACTTGGCTCCGACGATGGAGACCATCACCCCTAGAATCCCCAGGGTGATTGCGATGATTGTCATGGCTCTGGCGGCTTGTAGGTCCTGGGGCAAGGCCAGGAGGGAGTCGTAGACCTTACACTGCATCTGGCCCGTACTCTGGGTCACACAGTTCATCCACAGGCCCTCCCATATGGTCTGGGATGTGATAATGTTGGCTCCGATATAGGCCGTCACCTTCCACAAGGGCAAAGCACAGACCACGATGCCCAGGATGAATCCTATGACGCCCAGGGCAATCCCCACAATCTCCATGCCCATCGACATGCTGGCTCCCTGGACTGGCTCTCTCCAACACCTGCCCTTCCTGGAGGAACGAGGAAGTGACTTAACTAAGAAGTTCTTCGAACCTGCTGAGATTCTCAACTTCCAGAATCCAGCATACAAATTCTAGAACTAACAGAGGATTCAGTCAAGCTGAGATTCTAATCAAAGACAGAAGATTCTGTTCCAAATCTGGAACTTCTTAGTGGTTCTTTGTGTTCAGTGTTCTTCCTTGtactcctctctcgctctctcgctctctcgctctctctttctcgctctgtgtgtgggggtgtgatgTAGCTAAGTGATGCTGCCACATAATCAGAGATCCTTTATACCCCAGGGTAGgcaggagagaaggaagggagcagTCACCTGGTGATGATGTCTCCGTATGGTAGAACAGGTGTCTTCAAGCTCTTCACAAAAACAATGACCTGCCCATAGATGCTACTGAGAGAAGTGGATGgatgggggaggtggaggagggaggagaagcatgagag

Function

NR:

description
claudin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1022627 True 2417 TUCP 0.46 3 50034990 50037685

Neighbor

gene id symbol gene type direction distance location
LOC110534204 LOC106602914 coding upstream 20353 49999645 ~ 50014637 (+)
LOC110534202 LOC106602915 coding upstream 45250 49968144 ~ 49989740 (+)
LOC110534200 LOC106602916 coding upstream 80983 49811429 ~ 49954007 (+)
clk4b LOC106602917 coding upstream 224066 49800667 ~ 49810924 (+)
LOC110534196 LOC106602919 coding upstream 281923 49745087 ~ 49753067 (+)
LOC110534206 LOC106602913 coding downstream 41480 50079165 ~ 50080809 (+)
LOC110534207 LOC106603003 coding downstream 49584 50087269 ~ 50088380 (+)
LOC110534208 LOC106602911 coding downstream 52631 50090316 ~ 50091208 (+)
LOC118936703 NA coding downstream 80781 50118466 ~ 50124859 (+)
LOC110534209 LOC106563653 coding downstream 118515 50156200 ~ 50244978 (+)
G898871 NA non-coding upstream 15026 49996407 ~ 50019964 (+)
G898692 NA non-coding upstream 69270 49965488 ~ 49965720 (+)
G898649 NA non-coding upstream 131917 49902857 ~ 49903073 (+)
G898645 NA non-coding upstream 140948 49893820 ~ 49894042 (+)
G899003 NA non-coding downstream 55858 50093543 ~ 50093990 (+)
G899004 NA non-coding downstream 56532 50094217 ~ 50094594 (+)
G899009 NA non-coding downstream 60457 50098142 ~ 50098370 (+)
G899050 NA non-coding downstream 94396 50132081 ~ 50132304 (+)
G899052 NA non-coding downstream 95470 50133155 ~ 50133366 (+)
LOC110534189 LOC106602925 other upstream 602032 49426785 ~ 49432958 (+)
LOC110534184 LOC106563731 other upstream 753038 49277626 ~ 49282746 (+)
G897244 dach2 other upstream 1357925 48676257 ~ 48677065 (+)
G896217 NA other upstream 1799374 48235182 ~ 48235616 (+)
G896043 NA other upstream 2124015 47909716 ~ 47910975 (+)
G901849 LOC106602874 other downstream 2412533 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 2495043 52532434 ~ 52542498 (+)
G902707 NA other downstream 3478422 53516107 ~ 53519788 (+)
G902840 LOC106602714 other downstream 3632435 53670120 ~ 53674811 (+)
helt helt other downstream 3939746 53977386 ~ 53980090 (+)

Expression


Co-expression Network