G900596 (LOC106602883)


Basic Information

Item Value
gene id G900596
gene name LOC106602883
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 51142553 ~ 51153981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1024449
TCTTTGTTCATCAGGCTGATGATTGTGGTGGATGGTTATGATATTGATCAGGACATACCTCTGAGGATGTTGTGGGCAGTCTGGACACAGCGCAGCGAGGGAGAACAGTAGACAAAATCTATCACCGCTTGGCTCTCCAACAGAGCTTCACCCACAAGGCGGGCCTGAGTGGAACCGAATACTGTGATTGGACAGTCTTTGTCGTAGTCTCGGAAGCCTCCACTTCTCGTTGGCAAACTAGACGGCATGTTGAGGTTGGAGCGAACATATCGGCCTTTAGCATCAAAGCACTGAGTGatccagtgtttcccaaacactACATCCATCCTCTCACCATGGCGACACACAAACAGACTCCTCTTGGGAAGACATGACTGAGTAGTGGGCCTCAGCATCTGGACAGGTGGACAGAGGACAGTGAGGCTGGATGGATCTCCAGGGTCGTCAAGAAAAATTCCGTCCAGCTGTCCATCAAATAACAGGCCGCCCACTGCACCCCCAGTGTTGGACGGGGAGGCTGGGTTGCTGAAAGAGTGAGATCCATGGAAGACCCAGGTGTCACACTCATCTGCCCGCCTGACATAGTTCTCAGGCAGCAGTCCAGGTAGCCCAGTGCCCAGAGAGGTGCCATAGACCCAGCCCTCGCTGGCACTACCCTGTTCCACAGGGGTCATGAAGATAAAGTCGCCAGGCGCCAGCTCTAGCTCGTCCTCATTCTGGGGCACGTATGGGTACATCACACGCAgcgtct
>TU1024448
CTTAAGCAGTTCATGATCACTATAATTTTCACAATCCTTTATCATTACAGAGGCAGTCATTTGCAACAAAATATAATACACAACCTTCTGGAACACTGTGTAATGCACACATCTTAAAACAATAAATACAACATTTTAACaggatttctttttttttcatgTATAGTTTGTGAGCTTGTTTTATTTCCCCTTTTTGCATGGAGAGCACTTGTGGAAATAGTGAGAGCAGTCTGGCTCAGCGCAGAGGAggttattattaataataattttTTTCTTACCATTAAAATGACAACAAAACAAGTTAACGGTAATGTGGGAAGACTAGACTGTGTCGAGTACTGACGACTTCAATAGATGGAGTACTGCCAACTCAAGTAGGATGGACGAAACAGTGTGAGGGTAAAGTGAAGTTGCAAAACCAAGTAAAGGGAATTAACTCAGCGCAGAAAAAATTGATCTGTAACTTCTTTAACCAATAATACGTTTTCTTCACTCATTCATTAAAGCATTCGCTCCTTTACAACAATATAAATGAATGGTTTCATACATTATCATTTGAAGGCTGTTGTATATTTTGTACATACATTTGACAACCATATCATTATATCCTTTTTTCAATAATAGTGATTCCCCGGTTCATATAGGCAATCACGTACATTTAAAATAAACAACTTAAATATCCAATCtttcaacatattcaaataacttTCTAATCTAGCAAACATATCACTGGCTAAACACAGACAATGGGAGAGTCCTGAGAAGAGCTTTCTGTGCTCTGTGCAAAGACATGGCATAGAGCACagtaaagaggggagagagagaaaaacagtgagagagaggaagagacagaagtgagagagacggggggggggggggggtgtgacagAAGCATTGTTTTAATTTCTAAGATCACGCTTTCCCACTTCTGCCAGCATATTGTGTTTGCAGCCATGTTGTTGCAAGCGCAATGCTTTGTTATACTGTAGATGGGGTTACTAATGACGTTTATCAGGTTGTGAAAGAAACAGGTTATTACTGTGTATAGCTTTGCGGGGAGACCGAAACACAGTTGGCCTCAAATGTAGACATTTGTGACGTGACTGATCGTCATgacaaaacatattgatattgGCCATATATGAATAATAAGTCCTTCCAGAGGAAGCATCTCAATGTTGATGGGTTTTAATGTACTGTTTAGTCTGTTTTTTTTGAGCAAAGGTGACGTTTGGGgcggaggagtggaggggggggggggggggggggggggctgtgtgggTTACATTGCACATTTACCAGGTCTCCACTCATAGGTCACTATATAAAGGAAAAGGAAAGCATACATACATTAAGGAAAAAAAAGTGAAAATATGCTGGTGCTTTTTAACATAACACTGCTTATAACAGGTTCTGAGAAGGATCATTAGGATCAAATGCTTCTTCTCAAGACATCTGTGATGACTGTCAACCATCTCCATTTCACCTTGACAAGAAAAATCTTAATTCAGACAGCAAGAGTAGTTTGGTTGGTTGGCTACATCCTAGGTGTCTCATGTGCAGTAGCTAGCTGTCCCAAAACACATGGCACTGGTTGATATGTAGAACTGCTCATGACATCGTCCCTCTGCCTTCATTGGTTGGACGTACCTGCATGTCATTTTCTTAGTTGTGCTAACAAACATGAACACTTGTCATTTAACAGGATGTGCGCTGCACAAAtgtaaaagacaaaaacaaataaatgttAAAAGCTTGAATGTTTAACCCTTTCCAAACAAACGTCTTTAAACAAAGCATTTACGGCTAGGTTGGAGTTGCTGAGGGATGGTTGAACTAGCCAACTCGACCCTAAAGCTAAAAGTGACAGCTCTCATCTGATTGTCAAGATTCAGGCctatatttgtgctttttgaggaGGGTTTATACAGCGGGTGAAATGACTGAGTACATTGAAAGTCACATTTTCAGAGCCATGGAAGATTCTAGCAGAAAAGGGGTTTCTTGTGCAGGTCTCTTCTCGTCACAGTGTATGAGAAAGcagccatgttttttttaaaatttttaaagGTGGCACCAAAGCGTCGGCTGGGTAGAGACCCCAGGCAGCACTGTCTGAAACATCCCCTTCTCATGACACGACCCAACCTAAGTTTGTTAGCCATCAACAACGGCTCAGAAATATGACACGTTTTCATGAAGCGCTCTCCCCATTCAGTGAGGCatagggaagggaggggaaagGGCAACTTGGAGATTTCGCTGCCCTGCTCCTGTCCTTTGTGCTCTGGCCAatacacacacctcctcattcacaAATAGTGCATTAAAGCATACATCTTCAACACATATCAATATATTCTatcaatatacactaccgttcaaaatatactataacatcaaattgatcagaaatacagtgtagacattgttaatgtgttaaatgactattgtctcaacgtcaacagtgaagactggtgttttgcgggtaccatttaatgaagctgccagttgaggacttgtgtttctcaaactagaaactctaatatacttgtcatcttgctcagttgtacaccgggacctcccactcctctttctattctggttagagccagttggtgcggttctgtgaagggagtagtacacagcattgtacgagatcttcagtttcttgtcaatttctcgcatggaatagccttcatttctcagaacaagaatagactgacgagtttcagaagaaagttatttgtttcaggccattttgagcctgtaatcaaacccacaaatgctgatgctccagatactcaactagtctaaaggcggccagttttattgcttctttaaccagaACAACAGTGTtcagctaacataattgcaaaagggttttctaatgatcaattaggcttttaaaattataaacttggattagctaacacaacgtgccattggaacacaggagtgatggttgctgataatgagcctctgtttgcctatgtagatattccataaaaaaaatatgccgtttccagctacaatagtcatttacaacattaacaaggtccacactgtatttctgatcaatctgatgttattttaaatggggGAAAATgttctgcttttctttcaaaaacatcaacatttctaagtgaccccaaactttagaacggtagtgtttatatatatatatatatctcaatgCTGCAATATACACTGATTGTACAacatattaggaacacctgctctttccatgacataaactgaccaggtgaatccaggtgaaagctatgatcctttattgatgacacctgttaaatccacttcaatcagtgtagacgaaggAGAGaacacaggttaaagaaggagttttaagccttgagacatggattatgtatgtgtgccattcagagggtgaatgggcaagacaaaatattgaagtgcttttgaacgaggtatggtagcaagtgccaggcgcaccggtttgagtgtgtaaagaactgcaacgctgctgggtttttcatgctcaatagTTTGCCGTGTGTATCAACAATTGGTCCACCagccaaagaacatccagccaacttgacaactgtgggaagcataggAATCAACATGggcaacatccctgtggaacgctttcaataTCCACGcctcaacgaattgaggctgttcaactcaatattaggaaggcattcctaatgttttgtaccctcagtGTATATAGACTCATTCAATGAGTGTGTTTACACAGCATATGCGATGGAAGGCGGGGCATTTTTGGTCTGGTTTTgatagcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttaccgCGCTAGTTAGATAGCAGAGGAAATGTTTGCTTTGCGTTGGCTGCATCCGTCTTAGCTCAGCAGTGTCTCTCTGGGCTGCTGGGAGGTGGGGGCGGGGCAGGAATTCCTCAGTCCTGCTGTAGCGTCTCCCTCCAATTGAAGCTGTGATTGGGCCCGTGGGTCAATGGAAGGATGGGCGGGTCCACCAGCTGCCACACCCctgtctcccccatctcctcaGCCGCACAGAA
>TU1024450
CTTAAGCAGTTCATGATCACTATAATTTTCACAATCCTTTATCATTACAGAGGCAGTCATTTGCAACAAAATATAATACACAACCTTCTGGAACACTGTGTAATGCACACATCTTAAAACAATAAATACAACATTTTAACaggatttctttttttttcatgTATAGTTTGTGAGCTTGTTTTATTTCCCCTTTTTGCATGGAGAGCACTTGTGGAAATAGTGAGAGCAGTCTGGCTCAGCGCAGAGGAggttattattaataataattttTTTCTTACCATTAAAATGACAACAAAACAAGTTAACGGTAATGTGGGAAGACTAGACTGTGTCGAGTACTGACGACTTCAATAGATGGAGTACTGCCAACTCAAGTAGGATGGACGAAACAGTGTGAGGGTAAAGTGAAGTTGCAAAACCAAGTAAAGGGAATTAACTCAGCGCAGAAAAAATTGATCTGTAACTTCTTTAACCAATAATACGTTTTCTTCACTCATTCATTAAAGCATTCGCTCCTTTACAACAATATAAATGAATGGTTTCATACATTATCATTTGAAGGCTGTTGTATATTTTGTACATACATTTGACAACCATATCATTATATCCTTTTTTCAATAATAGTGATTCCCCGGTTCATATAGGCAATCACGTACATTTAAAATAAACAACTTAAATATCCAATCtttcaacatattcaaataacttTCTAATCTAGCAAACATATCACTGGCTAAACACAGACAATGGGAGAGTCCTGAGAAGAGCTTTCTGTGCTCTGTGCAAAGACATGGCATAGAGCACagtaaagaggggagagagagaaaaacagtgagagagaggaagagacagaagtgagagagacggggggggggggggggtgtgacagAAGCATTGTTTTAATTTCTAAGATCACGCTTTCCCACTTCTGCCAGCATATTGTGTTTGCAGCCATGTTGTTGCAAGCGCAATGCTTTGTTATACTGTAGATGGGGTTACTAATGACGTTTATCAGGTTGTGAAAGAAACAGGTTATTACTGTGTATAGCTTTGCGGGGAGACCGAAACACAGTTGGCCTCAAATGTAGACATTTGTGACGTGACTGATCGTCATgacaaaacatattgatattgGCCATATATGAATAATAAGTCCTTCCAGAGGAAGCATCTCAATGTTGATGGGTTTTAATGTACTGTTTAGTCTGTTTTTTTTGAGCAAAGGTGACGTTTGGGgcggaggagtggaggggggggggggggggggggggggctgtgtgggTTACATTGCACATTTACCAGGTCTCCACTCATAGGTCACTATATAAAGGAAAAGGAAAGCATACATACATTAAGGAAAAAAAAGTGAAAATATGCTGGTGCTTTTTAACATAACACTGCTTATAACAGGTTCTGAGAAGGATCATTAGGATCAAATGCTTCTTCTCAAGACATCTGTGATGACTGTCAACCATCTCCATTTCACCTTGACAAGAAAAATCTTAATTCAGACAGCAAGAGTAGTTTGGTTGGTTGGCTACATCCTAGGTGTCTCATGTGCAGTAGCTAGCTGTCCCAAAACACATGGCACTGGTTGATATGTAGAACTGCTCATGACATCGTCCCTCTGCCTTCATTGGTTGGACGTACCTGCATGTCATTTTCTTAGTTGTGCTAACAAACATGAACACTTGTCATTTAACAGGATGTGCGCTGCACAAAtgtaaaagacaaaaacaaataaatgttAAAAGCTTGAATGTTTAACCCTTTCCAAACAAACGTCTTTAAACAAAGCATTTACGGCTAGGTTGGAGTTGCTGAGGGATGGTTGAACTAGCCAACTCGACCCTAAAGCTAAAAGTGACAGCTCTCATCTGATTGTCAAGATTCAGGCctatatttgtgctttttgaggaGGGTTTATACAGCGGGTGAAATGACTGAGTACATTGAAAGTCACATTTTCAGAGCCATGGAAGATTCTAGCAGAAAAGGGGTTTCTTGTGCAGGTCTCTTCTCGTCACAGTGTATGAGAAAGcagccatgttttttttaaaatttttaaagGTGGCACCAAAGCGTCGGCTGGGTAGAGACCCCAGGCAGCACTGTCTGAAACATCCCCTTCTCATGACACGACCCAACCTAAGTTTGTTAGCCATCAACAACGGCTCAGAAATATGACACGTTTTCATGAAGCGCTCTCCCCATTCAGTGAGGCatagggaagggaggggaaagGGCAACTTGGAGATTTCGCTGCCCTGCTCCTGTCCTTTGTGCTCTGGCCAatacacacacctcctcattcacaAATAGTGCATTAAAGCATACATCTTCAACACATATCAATATATTCTatcaatatacactaccgttcaaaatatactataacatcaaattgatcagaaatacagtgcagagttgcaaagaaaaggccatatctcagactggacaaTCAAAATAAATGCTTAAGAcggggcaaaagaacacagacactggacagaggaactctgcctagaaggctagcatcccggagtcgcctcttcactgttgacattgagactggtgttttgcgggtaccatttaatgaagctgccagttgaggacttgtgtttctcaaactagaaactctaatatacttgtcatcttgctcagttgtacaccgggacctcccactcctctttctattctggttagagccagttggtgcggttctgtgaagggagtagtacacagcattgtacgagatcttcagtttcttgtcaatttctcgcatggaatagccttcatttctcagaacaagaatagactgacgagtttcagaagaaagttatttgtttcaggccattttgagcctgtaatcaaacccacaaatgctgatgctccagatactcaactagtctaaaggcggccagttttattgcttctttaaccagaACAACAGTGTtcagctaacataattgcaaaagggttttctaatgatcaattaggcttttaaaattataaacttggattagctaacacaacgtgccattggaacacaggagtgatggttgctgataatgagcctctgtttgcctatgtagatattccataaaaaaaatatgccgtttccagctacaatagtcatttacaacattaacaaggtccacactgtatttctgatcaatctgatgttattttaaatggggGAAAATgttctgcttttctttcaaaaacatcaacatttctaagtgaccccaaactttagaacggtagtgtttatatatatatatatatctcaatgCTGCAATATACACTGATTGTACAacatattaggaacacctgctctttccatgacataaactgaccaggtgaatccaggtgaaagctatgatcctttattgatgacacctgttaaatccacttcaatcagtgtagacgaaggAGAGaacacaggttaaagaaggagttttaagccttgagacatggattatgtatgtgtgccattcagagggtgaatgggcaagacaaaatattgaagtgcttttgaacgaggtatggtagcaagtgccaggcgcaccggtttgagtgtgtaaagaactgcaacgctgctgggtttttcatgctcaatagTTTGCCGTGTGTATCAACAATTGGTCCACCagccaaagaacatccagccaacttgacaactgtgggaagcataggAATCAACATGggcaacatccctgtggaacgctttcaataTCCACGcctcaacgaattgaggctgttcaactcaatattaggaaggcattcctaatgttttgtaccctcagtGTATATAGACTCATTCAATGAGTGTGTTTACACAGCATATGCGATGGAAGGCGGGGCATTTTTGGTCTGGTTTTgatagcggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttaccgCGCTAGTTAGATAGCAGAGGAAATGTTTGCTTTGCGTTGGCTGCATCCGTCTTAGCTCAGCAGTGTCTCTCTGGGCTGCTGGGAGGTGGGGGCGGGGCAGGAATTCCTCAGTCCTGCTGTAGCGTCTCCCTCCAATTGAAGCTGTGATTGGGCCCGTGGGTCAATGGAAGGATGGGCGGGTCCACCAGCTGCCACACCCctgtctcccccatctcctcaGCCGCACAGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1024449 False 751 lncRNA 0.54 4 51142553 51143857
TU1024448 False 4072 lncRNA 0.41 2 51149736 51153981
TU1024450 True 4166 lncRNA 0.41 2 51149736 51153981
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Neighbor

gene id symbol gene type direction distance location
si:ch211-215c18.3 NA coding downstream 180367 50953168 ~ 50962186 (-)
LOC110534228 NA coding downstream 374733 50721690 ~ 50767820 (-)
slc25a15b slc25a15 coding downstream 505505 50626130 ~ 50637048 (-)
LOC110534220 LOC106602898 coding downstream 660019 50463950 ~ 50482534 (-)
LOC110534218 LOC106602900 coding downstream 688268 50452453 ~ 50454285 (-)
LOC110534238 bco2b coding upstream 303115 51457096 ~ 51559902 (-)
LOC110534240 bco2b coding upstream 444646 51598627 ~ 51656987 (-)
adamts15a LOC106602881 coding upstream 935850 52089831 ~ 52124329 (-)
atf5a LOC106602866 coding upstream 1122350 52276331 ~ 52281912 (-)
phldb1a LOC106602858 coding upstream 1158219 52312200 ~ 52396922 (-)
G900109 NA non-coding downstream 97954 51044107 ~ 51044599 (-)
G900094 NA non-coding downstream 104166 51037551 ~ 51038387 (-)
G900087 NA non-coding downstream 136831 51005310 ~ 51005722 (-)
G900078 NA non-coding downstream 147139 50995182 ~ 50995414 (-)
G900069 LOC106602888 non-coding downstream 159294 50973847 ~ 50983259 (-)
G900792 NA non-coding upstream 239557 51393538 ~ 51393814 (-)
G900799 NA non-coding upstream 249973 51403954 ~ 51404166 (-)
G900809 NA non-coding upstream 257358 51411339 ~ 51411820 (-)
G900813 NA non-coding upstream 261986 51415967 ~ 51416168 (-)
G900816 NA non-coding upstream 264635 51418616 ~ 51418836 (-)
G900070 NA other downstream 160803 50970763 ~ 50981750 (-)
G899739 LOC106602890 other downstream 392320 50743158 ~ 50750233 (-)
G899727 NA other downstream 420950 50720986 ~ 50721603 (-)
G899421 NA other downstream 959765 50182396 ~ 50182788 (-)
G900807 NA other upstream 301519 51455500 ~ 51455942 (-)
G902519 NA other upstream 1748213 52902194 ~ 52937648 (-)
casp3a LOC106602722 other upstream 2718258 53872239 ~ 53878829 (-)
G903619 primpol other upstream 2725563 53879544 ~ 53883773 (-)
cfap97 cfap97 other upstream 2928185 54082166 ~ 54111277 (-)

Expression

G900596(LOC106602883) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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G900596(LOC106602883) Expression in each Bioproject

Bar chart with 21 bars.
G900596(LOC106602883) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network