G902518 (LOC106602856)


Basic Information

Item Value
gene id G902518
gene name LOC106602856
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 52899080 ~ 52901139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1026563
GAGTGTCGGCTGAGACAGCTAGGACCACTGGGCTCAGGGTTAGGTGGAAGAGGTTTCATTGAAATCTGAGGTCTGAGTTGAGGGCGGGGCATGATGGGGCAGGGGAGAAGGCAGAGATCATGTAAAACAGGAAGTGGAGGCAGAGGTCGCAGGATTGGCTGATGGGGGTTGCcatgggagatggagggaggagtctGAGGGGAAGGGGTACTCTTCTGGATGTCTGACTTTGAAATTGAGGTTAttaggccagagagagagggcgtGGACATGCTCTGGAGATTATCCTTCGGAGGAGAGGGATGCTGCGTCTTGTGCATCAGTGGAGGTTTCATTAGGCGTGGGAGTGGGGGTGGATGTGGTTCTTCTCTGTCAGACATGGACATGGCCTCATATGTAACCTCATCATATGTCTCAGTTTTGTTTTGAGGGGGTCTGGTGTGTGAGCTGTGCTGGTGTGAGCTGTGCTGGTGTGAGCTGTGCTTGGTGTTTGAGCTGTGCTGTTGTGTGCTATGCTGATATGAGCTGTGCTGTGAGCAGATCATCAGGGCCAGGGAAGATTCTGCGTTGGATGATGTGTTATGTTTTGAAGGGAAGGATCTCTGGCTGTTATTCTCGCTGACCTTGTGAACTCTGACCTCTCTGTGCTCACTTTTCCCCCTTCGCTCATCTGCTCTGAAAGATCCCAACATCTCTTCATtcacctccttcctctctctcttctggtcCTGATTCCCTCGTTTTTCTTTCTCTTCATCCCCTGTCACTTCTATGTagtcatcttcatcctcttccttcccctccttcacCACTCTCTTCTGGTGCTCATTCCCTCGTTTGTCTTTTTCTTCATCCCCTATCACCTCTACATAgttatcttcctcttcctccagaGGAACCCAGACTAACTTCATGCCAGTTCTCCTCAGGTGACAGATGCACTGGCACTGTGTCATGTTGCCATGGTGACCACTAGGGGTGGCTGCCGAGCCTGTGGTTTGTCTGCTCTCAATGTCActgtctctgcccctgcctcTACACCTGTTCTTGTCTCTAGTCCTGCCTGCCCCATCACCTCATACTCCTGGTTGCTGAACTTACGCACAATCCTCTTCACCTTCCCCTCCGGTAGTTGATGTTGTTTCCTCTCCTGGCTCCTCTCCCCTGATGGGGGTTGGTTCTGGTTCAGGTTTGGACTGTTCTGGTTTCTGGTCTGGAAGTGGTTTGGGATGTTTGGCCCCAAGGATTTGAGGTTAGAAGGCTTTGGGGGAACGACGGATCTGGGTCGAAGTCTTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1026563 True 1296 lncRNA 0.52 2 52899080 52901139

Neighbor

gene id symbol gene type direction distance location
spns2 LOC106602867 coding downstream 51952 52705965 ~ 52847128 (-)
ftr82 LOC106602865 coding downstream 255613 52637776 ~ 52643467 (-)
ift22 ift22 coding downstream 269404 52626882 ~ 52629676 (-)
c2cd2l c2cd2l coding downstream 384281 52467134 ~ 52514799 (-)
LOC110534249 LOC106602874 coding downstream 448198 52450210 ~ 52450882 (-)
LOC110534265 LOC106602857 coding upstream 39711 52940850 ~ 52962268 (-)
LOC118966634 LOC106602857 coding upstream 212950 53114089 ~ 53126109 (-)
LOC110534268 LOC106602801 coding upstream 488902 53390041 ~ 53419391 (-)
LOC110534271 LOC106602804 coding upstream 615185 53516324 ~ 53519848 (-)
LOC110534275 LOC106602714 coding upstream 750823 53651962 ~ 53675094 (-)
G902361 NA non-coding downstream 28200 52870638 ~ 52870880 (-)
G902350 LOC106582599 non-coding downstream 34058 52864746 ~ 52865022 (-)
G902286 NA non-coding downstream 168892 52729887 ~ 52730188 (-)
G902278 NA non-coding downstream 187268 52711477 ~ 52711812 (-)
G902277 NA non-coding downstream 188769 52710007 ~ 52710311 (-)
G902519 NA non-coding upstream 30403 52902194 ~ 52937648 (-)
G902541 NA non-coding upstream 137183 53038322 ~ 53074699 (-)
G902546 NA non-coding upstream 144693 53045832 ~ 53054234 (-)
G902535 NA non-coding upstream 145569 53046708 ~ 53077964 (-)
G902538 NA non-coding upstream 151706 53052845 ~ 53070473 (-)
G900807 NA other downstream 1443138 51455500 ~ 51455942 (-)
G900070 NA other downstream 1917330 50970763 ~ 50981750 (-)
G899739 LOC106602890 other downstream 2148847 50743158 ~ 50750233 (-)
G899727 NA other downstream 2177477 50720986 ~ 50721603 (-)
LOC110534220 LOC106602898 other downstream 2427202 50463950 ~ 50482534 (-)
casp3a LOC106602722 other upstream 971100 53872239 ~ 53878829 (-)
G903619 primpol other upstream 978405 53879544 ~ 53883773 (-)
cfap97 cfap97 other upstream 1181027 54082166 ~ 54111277 (-)
G904991 NA other upstream 2378360 55279499 ~ 55280341 (-)

Expression


Co-expression Network