G902511


Basic Information

Item Value
gene id G902511
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 53218969 ~ 53283151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1026552
gtatagaatttttgaaatctgttacactgtttccgtttttcactttcttgtcctctttatgtcctccctccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcatcacttccaagtgacattctttgtaagttaaatcaagcaattttttgacacaaatcagcaaataaatccactttgcaaccacttagacaagaaatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggaaaaaatgatattcgcatcaaaagttacaggagtttaagtaacagcaccaacatcagtttctgtatgttggtgctgttacttaaactcctgtaacttttgatgcgaatatcattttttctccaaactccagatttgagtagcagagaagtagacgaagctggaaaacttgacatttcttgtctaagtggttgcaaagtggatttatttgctgatttgtgtcaaaaaattgcttgatttcacttacaaagaatgtcacttggaagtgatgatgtcacaatggggcacttgagtttcttgagagatccaatgaaagcggagggaggacataaagaggacaagaaagtgaaaaacggaaacagtgtaacagatttcaaaaattctatacaaacaacttgatcgagaccgttgcgaatttgttgatattggaacggcatttctagcttaaaaggtgtaggaggagtgtctcctcatgattttggccctgcagcgtcggcgagtatcctagccaacggttccattttggaatatcagtattgacacagagagcttttagtgaagagcaggtgaggggtttcttaaatcgctctccctcgagaacggtagacccaattttaaaagcgtttccgcccttgagaagcagagaagtagaggaagattttatgccaaactatgtttgtgtaactgtttgtttagtggtcgaaatgatagttgtttgggaaagtaataaattgccttgctgctggcatgatttacagacacttgaaagtgaggcgatgggttacgaaaacggc
>TU1026551
caatacggatattccaaaatggaaccgttggctaggatactcgccgacgctgcagggccaaaatcatgaggagacactcctcctacaccttttaaggtatgttggtgctgttacttaaactcctgtaacttttgatgcgaatatcattttttctccaaactccagatttgagtagcagagaagtagacgaagctggaaaacttgacatttcttgtctaagtggttgcaaagtggatttatttgctgatttgtgtcaaaaaattgcttgatttcacttacaaagaatgtcacttggaagtgatgatgtcacaatggggcacttgagtttcttgagagatccaatgaaagcggagggaggacataaagaggacaagaaagtgaaaaacggaaacagtgtaacagatttcaaaaattctatacaaacaacttgatcgagaccgttgcgaatttgttgatattggaacggcatttctagcttaaaaggtgtaggaggagtgtctcctcatgattttggccctgcagcgtcggcgagtatcctagccaacggttccattttggaatatcagtattgacacagagagcttttagtgaagagcaggtgaggggtttcttaaatcgctctccctcgagaacggtagacccaattttaaaagcgtttccgcccttgagaagcagagaagtagaggaagattttatgccaaactatgtttgtgtaactgtttggttagtggtcgaaattatagttgtttgggaaagtaataaattgccttgctgctggcatgatttacagacacttgaaagtgaggcgatgggttacgaaaacggctatagttacagattggtagccccgatttgaaagtcgcctttttcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1026552 False 1061 lncRNA 0.40 4 53218969 53279931
TU1026551 True 872 lncRNA 0.42 2 53223050 53283151
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118966635 fis1 coding upstream 85573 53126760 ~ 53133396 (+)
LOC110533143 fis1 coding upstream 253959 52963093 ~ 52965010 (+)
LOC110534264 LOC106602856 coding upstream 281328 52897712 ~ 52937641 (+)
ruvbl2 ruvbl2 coding upstream 530500 52673732 ~ 52688469 (+)
ftr83 LOC106602864 coding upstream 559978 52649394 ~ 52658991 (+)
cntrob LOC106602799 coding downstream 30779 53313930 ~ 53354210 (+)
LOC110534269 LOC106591825 coding downstream 170826 53453977 ~ 53479366 (+)
LOC110534270 LOC106602803 coding downstream 212553 53495704 ~ 53500783 (+)
LOC110534272 LOC106602712 coding downstream 239702 53522853 ~ 53554003 (+)
LOC110534273 LOC106602713 coding downstream 278392 53561543 ~ 53600267 (+)
G902488 NA non-coding upstream 17296 53155721 ~ 53201673 (+)
G902448 NA non-coding upstream 66074 53078459 ~ 53152895 (+)
G902445 NA non-coding upstream 83943 53040548 ~ 53135026 (+)
G902657 NA non-coding downstream 12589 53295740 ~ 53305669 (+)
G902666 NA non-coding downstream 29873 53313024 ~ 53313595 (+)
G902682 NA non-coding downstream 75969 53359120 ~ 53359441 (+)
G902688 NA non-coding downstream 79363 53362514 ~ 53362875 (+)
G902693 NA non-coding downstream 83653 53366804 ~ 53367039 (+)
LOC110534253 hinfp other upstream 683319 52532434 ~ 52542498 (+)
G901849 LOC106602874 other upstream 743604 52450218 ~ 52475365 (+)
G898894 LOC106603005 other upstream 3181284 50034990 ~ 50037685 (+)
LOC110534189 LOC106602925 other upstream 3786011 49426785 ~ 49432958 (+)
LOC110534184 LOC106563731 other upstream 3937017 49277626 ~ 49282746 (+)
G902707 NA other downstream 232956 53516107 ~ 53519788 (+)
G902840 LOC106602714 other downstream 386969 53670120 ~ 53674811 (+)
helt helt other downstream 694280 53977386 ~ 53980090 (+)
G904621 LOC106567469 other downstream 1947748 55230899 ~ 55231255 (+)
G904663 NA other downstream 2012086 55295237 ~ 55296054 (+)

Expression

G902511 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
End of interactive chart.

G902511 Expression in each Bioproject

Bar chart with 10 bars.
G902511 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
End of interactive chart.

Co-expression Network